Strain Fitness in Shewanella sp. ANA-3 around Shewana3_1730

Experiment: syringaldehyde 1 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_1729 and Shewana3_1730 are separated by 220 nucleotidesShewana3_1730 and cysB are separated by 227 nucleotides Shewana3_1729: Shewana3_1729 - DNA topoisomerase I (RefSeq), at 2,035,692 to 2,038,376 _1729 Shewana3_1730: Shewana3_1730 - hypothetical protein (RefSeq), at 2,038,597 to 2,039,376 _1730 Shewana3_1731: cysB - transcriptional regulator CysB (RefSeq), at 2,039,604 to 2,040,578 cysB Position (kb) 2038 2039 2040Strain fitness (log2 ratio) -1 0 1at 2039.080 kb on + strand, within Shewana3_1730at 2039.203 kb on - strand, within Shewana3_1730at 2039.221 kb on - strand, within Shewana3_1730at 2039.616 kb on - strandat 2039.618 kb on + strandat 2039.976 kb on + strand, within cysB

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Per-strain Table

Position Strand Gene LocusTag Fraction syringaldehyde 1 mM
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2,039,080 + Shewana3_1730 0.62 -0.5
2,039,203 - Shewana3_1730 0.78 -0.5
2,039,221 - Shewana3_1730 0.80 -0.1
2,039,616 - +0.5
2,039,618 + -1.1
2,039,976 + cysB Shewana3_1731 0.38 +0.5

Or see this region's nucleotide sequence