Experiment: syringaldehyde 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_1724 and Shewana3_1725 are separated by 164 nucleotides Shewana3_1725 and Shewana3_1726 are separated by 156 nucleotides Shewana3_1726 and Shewana3_1727 are separated by 220 nucleotides
Shewana3_1724: Shewana3_1724 - two component transcriptional regulator (RefSeq), at 2,027,425 to 2,028,108
_1724
Shewana3_1725: Shewana3_1725 - hypothetical protein (RefSeq), at 2,028,273 to 2,028,620
_1725
Shewana3_1726: Shewana3_1726 - sodium:dicarboxylate symporter (RefSeq), at 2,028,777 to 2,030,090
_1726
Shewana3_1727: Shewana3_1727 - Ig domain-containing protein (RefSeq), at 2,030,311 to 2,033,985
_1727
Position (kb)
2028
2029
2030
2031 Strain fitness (log2 ratio)
-1
0
1 at 2028.118 kb on - strand at 2028.212 kb on - strand at 2028.421 kb on - strand, within Shewana3_1725 at 2028.491 kb on - strand, within Shewana3_1725 at 2029.073 kb on - strand, within Shewana3_1726 at 2029.184 kb on - strand, within Shewana3_1726 at 2029.243 kb on - strand, within Shewana3_1726 at 2029.350 kb on - strand, within Shewana3_1726 at 2029.352 kb on + strand, within Shewana3_1726 at 2029.372 kb on - strand, within Shewana3_1726 at 2029.388 kb on - strand, within Shewana3_1726 at 2029.696 kb on - strand, within Shewana3_1726 at 2029.710 kb on + strand, within Shewana3_1726 at 2029.752 kb on + strand, within Shewana3_1726 at 2030.291 kb on + strand at 2030.421 kb on - strand at 2030.776 kb on + strand, within Shewana3_1727 at 2030.784 kb on - strand, within Shewana3_1727 at 2030.810 kb on - strand, within Shewana3_1727 at 2030.813 kb on + strand, within Shewana3_1727 at 2030.923 kb on + strand, within Shewana3_1727 at 2031.018 kb on + strand, within Shewana3_1727 at 2031.078 kb on + strand, within Shewana3_1727
Per-strain Table
Position Strand Gene LocusTag Fraction syringaldehyde 1 mM remove 2,028,118 - -0.4 2,028,212 - -0.2 2,028,421 - Shewana3_1725 0.43 -0.1 2,028,491 - Shewana3_1725 0.63 -0.3 2,029,073 - Shewana3_1726 0.23 +0.3 2,029,184 - Shewana3_1726 0.31 +0.6 2,029,243 - Shewana3_1726 0.35 +0.3 2,029,350 - Shewana3_1726 0.44 -0.3 2,029,352 + Shewana3_1726 0.44 -0.5 2,029,372 - Shewana3_1726 0.45 +1.1 2,029,388 - Shewana3_1726 0.46 +1.1 2,029,696 - Shewana3_1726 0.70 +0.6 2,029,710 + Shewana3_1726 0.71 +0.3 2,029,752 + Shewana3_1726 0.74 -0.7 2,030,291 + -0.2 2,030,421 - -0.1 2,030,776 + Shewana3_1727 0.13 -0.3 2,030,784 - Shewana3_1727 0.13 -0.1 2,030,810 - Shewana3_1727 0.14 +0.5 2,030,813 + Shewana3_1727 0.14 +0.9 2,030,923 + Shewana3_1727 0.17 +0.9 2,031,018 + Shewana3_1727 0.19 -0.5 2,031,078 + Shewana3_1727 0.21 -0.3
Or see this region's nucleotide sequence