Strain Fitness in Shewanella sp. ANA-3 around Shewana3_1724

Experiment: syringaldehyde 1 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_1723 and Shewana3_1724 overlap by 10 nucleotidesShewana3_1724 and Shewana3_1725 are separated by 164 nucleotidesShewana3_1725 and Shewana3_1726 are separated by 156 nucleotides Shewana3_1723: Shewana3_1723 - ATPase domain-containing protein (RefSeq), at 2,026,085 to 2,027,434 _1723 Shewana3_1724: Shewana3_1724 - two component transcriptional regulator (RefSeq), at 2,027,425 to 2,028,108 _1724 Shewana3_1725: Shewana3_1725 - hypothetical protein (RefSeq), at 2,028,273 to 2,028,620 _1725 Shewana3_1726: Shewana3_1726 - sodium:dicarboxylate symporter (RefSeq), at 2,028,777 to 2,030,090 _1726 Position (kb) 2027 2028 2029Strain fitness (log2 ratio) -1 0 1at 2026.538 kb on + strand, within Shewana3_1723at 2026.875 kb on + strand, within Shewana3_1723at 2027.063 kb on + strand, within Shewana3_1723at 2027.472 kb on + strandat 2027.480 kb on - strandat 2027.480 kb on - strandat 2027.531 kb on - strand, within Shewana3_1724at 2027.724 kb on - strand, within Shewana3_1724at 2028.118 kb on - strandat 2028.212 kb on - strandat 2028.421 kb on - strand, within Shewana3_1725at 2028.491 kb on - strand, within Shewana3_1725at 2029.073 kb on - strand, within Shewana3_1726

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Per-strain Table

Position Strand Gene LocusTag Fraction syringaldehyde 1 mM
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2,026,538 + Shewana3_1723 0.34 -0.1
2,026,875 + Shewana3_1723 0.59 -0.9
2,027,063 + Shewana3_1723 0.72 -0.8
2,027,472 + +0.5
2,027,480 - +1.5
2,027,480 - -1.0
2,027,531 - Shewana3_1724 0.15 -0.1
2,027,724 - Shewana3_1724 0.44 -0.1
2,028,118 - -0.4
2,028,212 - -0.2
2,028,421 - Shewana3_1725 0.43 -0.1
2,028,491 - Shewana3_1725 0.63 -0.3
2,029,073 - Shewana3_1726 0.23 +0.3

Or see this region's nucleotide sequence