Experiment: syringaldehyde 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_1721 and Shewana3_1722 are separated by 116 nucleotides Shewana3_1722 and Shewana3_1723 are separated by 15 nucleotides
Shewana3_1721: Shewana3_1721 - metal dependent phosphohydrolase (RefSeq), at 2,023,995 to 2,025,257
_1721
Shewana3_1722: Shewana3_1722 - prolyl 4-hydroxylase, alpha subunit (RefSeq), at 2,025,374 to 2,026,069
_1722
Shewana3_1723: Shewana3_1723 - ATPase domain-containing protein (RefSeq), at 2,026,085 to 2,027,434
_1723
Position (kb)
2025
2026
2027 Strain fitness (log2 ratio)
-2
-1
0
1 at 2024.404 kb on - strand, within Shewana3_1721 at 2024.538 kb on - strand, within Shewana3_1721 at 2024.540 kb on + strand, within Shewana3_1721 at 2024.657 kb on + strand, within Shewana3_1721 at 2024.753 kb on - strand, within Shewana3_1721 at 2024.755 kb on + strand, within Shewana3_1721 at 2024.832 kb on + strand, within Shewana3_1721 at 2024.857 kb on + strand, within Shewana3_1721 at 2024.932 kb on + strand, within Shewana3_1721 at 2025.560 kb on + strand, within Shewana3_1722 at 2025.614 kb on + strand, within Shewana3_1722 at 2025.873 kb on + strand, within Shewana3_1722 at 2026.333 kb on - strand, within Shewana3_1723 at 2026.338 kb on - strand, within Shewana3_1723 at 2026.538 kb on + strand, within Shewana3_1723 at 2026.875 kb on + strand, within Shewana3_1723 at 2027.063 kb on + strand, within Shewana3_1723
Per-strain Table
Position Strand Gene LocusTag Fraction syringaldehyde 1 mM remove 2,024,404 - Shewana3_1721 0.32 +0.7 2,024,538 - Shewana3_1721 0.43 -0.5 2,024,540 + Shewana3_1721 0.43 +1.5 2,024,657 + Shewana3_1721 0.52 +0.2 2,024,753 - Shewana3_1721 0.60 +0.5 2,024,755 + Shewana3_1721 0.60 -1.9 2,024,832 + Shewana3_1721 0.66 -2.2 2,024,857 + Shewana3_1721 0.68 -0.1 2,024,932 + Shewana3_1721 0.74 -0.9 2,025,560 + Shewana3_1722 0.27 -0.5 2,025,614 + Shewana3_1722 0.34 -1.5 2,025,873 + Shewana3_1722 0.72 -0.5 2,026,333 - Shewana3_1723 0.18 -0.9 2,026,338 - Shewana3_1723 0.19 -0.7 2,026,538 + Shewana3_1723 0.34 -0.1 2,026,875 + Shewana3_1723 0.59 -0.9 2,027,063 + Shewana3_1723 0.72 -0.8
Or see this region's nucleotide sequence