Experiment: syringaldehyde 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_1642 and Shewana3_1643 are separated by 78 nucleotides Shewana3_1643 and Shewana3_1644 are separated by 136 nucleotides Shewana3_1644 and Shewana3_1645 are separated by 29 nucleotides
Shewana3_1642: Shewana3_1642 - hypothetical protein (RefSeq), at 1,933,481 to 1,934,563
_1642
Shewana3_1643: Shewana3_1643 - DNA replication initiation factor (RefSeq), at 1,934,642 to 1,935,352
_1643
Shewana3_1644: Shewana3_1644 - transposase (RefSeq), at 1,935,489 to 1,935,884
_1644
Shewana3_1645: Shewana3_1645 - integrase catalytic subunit (RefSeq), at 1,935,914 to 1,936,717
_1645
Position (kb)
1934
1935
1936 Strain fitness (log2 ratio)
-1
0
1 at 1934.469 kb on + strand at 1934.588 kb on + strand at 1934.588 kb on + strand at 1934.693 kb on + strand at 1934.768 kb on + strand, within Shewana3_1643 at 1934.933 kb on - strand, within Shewana3_1643 at 1934.960 kb on + strand, within Shewana3_1643 at 1935.031 kb on - strand, within Shewana3_1643 at 1935.170 kb on + strand, within Shewana3_1643 at 1935.170 kb on + strand, within Shewana3_1643 at 1935.170 kb on + strand, within Shewana3_1643 at 1935.170 kb on + strand, within Shewana3_1643 at 1935.346 kb on + strand at 1935.360 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction syringaldehyde 1 mM remove 1,934,469 + +0.9 1,934,588 + +0.6 1,934,588 + -1.4 1,934,693 + +0.7 1,934,768 + Shewana3_1643 0.18 +0.5 1,934,933 - Shewana3_1643 0.41 -0.2 1,934,960 + Shewana3_1643 0.45 +1.2 1,935,031 - Shewana3_1643 0.55 +1.4 1,935,170 + Shewana3_1643 0.74 +0.6 1,935,170 + Shewana3_1643 0.74 +0.7 1,935,170 + Shewana3_1643 0.74 +1.0 1,935,170 + Shewana3_1643 0.74 +0.0 1,935,346 + +0.8 1,935,360 + +0.2
Or see this region's nucleotide sequence