Experiment: syringaldehyde 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_1589 and Shewana3_1590 are separated by 34 nucleotides Shewana3_1590 and Shewana3_1591 are separated by 261 nucleotides Shewana3_1591 and Shewana3_1592 are separated by 235 nucleotides
Shewana3_1589: Shewana3_1589 - GCN5-related N-acetyltransferase (RefSeq), at 1,866,683 to 1,867,147
_1589
Shewana3_1590: Shewana3_1590 - hypothetical protein (RefSeq), at 1,867,182 to 1,867,577
_1590
Shewana3_1591: Shewana3_1591 - hypothetical protein (RefSeq), at 1,867,839 to 1,868,225
_1591
Shewana3_1592: Shewana3_1592 - hypothetical protein (RefSeq), at 1,868,461 to 1,869,525
_1592
Position (kb)
1867
1868
1869 Strain fitness (log2 ratio)
-2
-1
0
1 at 1867.079 kb on + strand, within Shewana3_1589 at 1867.079 kb on + strand, within Shewana3_1589 at 1867.087 kb on - strand, within Shewana3_1589 at 1867.337 kb on + strand, within Shewana3_1590 at 1867.580 kb on - strand at 1867.580 kb on - strand at 1867.715 kb on + strand at 1867.723 kb on - strand at 1867.723 kb on - strand at 1867.744 kb on + strand at 1867.744 kb on + strand at 1867.788 kb on - strand at 1867.796 kb on - strand at 1868.067 kb on - strand, within Shewana3_1591 at 1868.426 kb on - strand at 1868.626 kb on - strand, within Shewana3_1592 at 1868.699 kb on - strand, within Shewana3_1592 at 1868.833 kb on - strand, within Shewana3_1592 at 1869.010 kb on + strand, within Shewana3_1592 at 1869.218 kb on + strand, within Shewana3_1592
Per-strain Table
Position Strand Gene LocusTag Fraction syringaldehyde 1 mM remove 1,867,079 + Shewana3_1589 0.85 +0.8 1,867,079 + Shewana3_1589 0.85 +0.7 1,867,087 - Shewana3_1589 0.87 +1.4 1,867,337 + Shewana3_1590 0.39 -0.7 1,867,580 - -1.2 1,867,580 - +1.4 1,867,715 + +1.4 1,867,723 - +1.4 1,867,723 - -0.6 1,867,744 + -0.4 1,867,744 + -1.1 1,867,788 - +0.4 1,867,796 - -0.2 1,868,067 - Shewana3_1591 0.59 -2.3 1,868,426 - -0.5 1,868,626 - Shewana3_1592 0.15 -0.9 1,868,699 - Shewana3_1592 0.22 +0.4 1,868,833 - Shewana3_1592 0.35 +0.4 1,869,010 + Shewana3_1592 0.52 +0.0 1,869,218 + Shewana3_1592 0.71 +0.1
Or see this region's nucleotide sequence