Experiment: syringaldehyde 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_1588 and Shewana3_1589 are separated by 82 nucleotides Shewana3_1589 and Shewana3_1590 are separated by 34 nucleotides Shewana3_1590 and Shewana3_1591 are separated by 261 nucleotides
Shewana3_1588: Shewana3_1588 - GCN5-related N-acetyltransferase (RefSeq), at 1,865,998 to 1,866,600
_1588
Shewana3_1589: Shewana3_1589 - GCN5-related N-acetyltransferase (RefSeq), at 1,866,683 to 1,867,147
_1589
Shewana3_1590: Shewana3_1590 - hypothetical protein (RefSeq), at 1,867,182 to 1,867,577
_1590
Shewana3_1591: Shewana3_1591 - hypothetical protein (RefSeq), at 1,867,839 to 1,868,225
_1591
Position (kb)
1866
1867
1868 Strain fitness (log2 ratio)
-2
-1
0
1 at 1865.784 kb on - strand at 1865.788 kb on + strand at 1865.793 kb on + strand at 1866.363 kb on - strand, within Shewana3_1588 at 1866.592 kb on + strand at 1867.079 kb on + strand, within Shewana3_1589 at 1867.079 kb on + strand, within Shewana3_1589 at 1867.087 kb on - strand, within Shewana3_1589 at 1867.337 kb on + strand, within Shewana3_1590 at 1867.580 kb on - strand at 1867.580 kb on - strand at 1867.715 kb on + strand at 1867.723 kb on - strand at 1867.723 kb on - strand at 1867.744 kb on + strand at 1867.744 kb on + strand at 1867.788 kb on - strand at 1867.796 kb on - strand at 1868.067 kb on - strand, within Shewana3_1591
Per-strain Table
Position Strand Gene LocusTag Fraction syringaldehyde 1 mM remove 1,865,784 - +0.2 1,865,788 + +0.7 1,865,793 + +0.8 1,866,363 - Shewana3_1588 0.61 +0.4 1,866,592 + -0.2 1,867,079 + Shewana3_1589 0.85 +0.8 1,867,079 + Shewana3_1589 0.85 +0.7 1,867,087 - Shewana3_1589 0.87 +1.4 1,867,337 + Shewana3_1590 0.39 -0.7 1,867,580 - -1.2 1,867,580 - +1.4 1,867,715 + +1.4 1,867,723 - +1.4 1,867,723 - -0.6 1,867,744 + -0.4 1,867,744 + -1.1 1,867,788 - +0.4 1,867,796 - -0.2 1,868,067 - Shewana3_1591 0.59 -2.3
Or see this region's nucleotide sequence