Experiment: syringaldehyde 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_1581 and Shewana3_1582 are separated by 92 nucleotides Shewana3_1582 and Shewana3_1583 are separated by 316 nucleotides
Shewana3_1581: Shewana3_1581 - 3-oxoacyl-(acyl carrier protein) synthase III (RefSeq), at 1,850,125 to 1,851,189
_1581
Shewana3_1582: Shewana3_1582 - GntR family transcriptional regulator (RefSeq), at 1,851,282 to 1,851,953
_1582
Shewana3_1583: Shewana3_1583 - D,D-heptose 1,7-bisphosphate phosphatase (RefSeq), at 1,852,270 to 1,852,821
_1583
Position (kb)
1851
1852 Strain fitness (log2 ratio)
-2
-1
0
1 at 1850.447 kb on - strand, within Shewana3_1581 at 1850.730 kb on + strand, within Shewana3_1581 at 1850.811 kb on - strand, within Shewana3_1581 at 1850.813 kb on + strand, within Shewana3_1581 at 1850.830 kb on + strand, within Shewana3_1581 at 1850.844 kb on - strand, within Shewana3_1581 at 1851.069 kb on - strand, within Shewana3_1581 at 1851.499 kb on - strand, within Shewana3_1582 at 1851.819 kb on + strand, within Shewana3_1582 at 1852.121 kb on - strand at 1852.179 kb on + strand at 1852.260 kb on + strand at 1852.268 kb on - strand at 1852.268 kb on - strand at 1852.583 kb on - strand, within Shewana3_1583 at 1852.661 kb on + strand, within Shewana3_1583 at 1852.686 kb on + strand, within Shewana3_1583 at 1852.741 kb on + strand, within Shewana3_1583 at 1852.749 kb on - strand, within Shewana3_1583 at 1852.948 kb on + strand at 1852.948 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction syringaldehyde 1 mM remove 1,850,447 - Shewana3_1581 0.30 -0.1 1,850,730 + Shewana3_1581 0.57 +0.4 1,850,811 - Shewana3_1581 0.64 +0.2 1,850,813 + Shewana3_1581 0.65 +0.4 1,850,830 + Shewana3_1581 0.66 +1.4 1,850,844 - Shewana3_1581 0.68 +0.7 1,851,069 - Shewana3_1581 0.89 -1.9 1,851,499 - Shewana3_1582 0.32 +0.4 1,851,819 + Shewana3_1582 0.80 +1.4 1,852,121 - -0.1 1,852,179 + +0.4 1,852,260 + +0.1 1,852,268 - +1.1 1,852,268 - +1.0 1,852,583 - Shewana3_1583 0.57 -0.9 1,852,661 + Shewana3_1583 0.71 -0.1 1,852,686 + Shewana3_1583 0.75 -0.1 1,852,741 + Shewana3_1583 0.85 -0.8 1,852,749 - Shewana3_1583 0.87 -0.9 1,852,948 + +0.4 1,852,948 + +0.1
Or see this region's nucleotide sequence