Experiment: syringaldehyde 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_1544 and Shewana3_1545 are separated by 6 nucleotides Shewana3_1545 and Shewana3_1546 are separated by 130 nucleotides Shewana3_1546 and Shewana3_1547 are separated by 321 nucleotides Shewana3_1547 and Shewana3_1548 are separated by 132 nucleotides
Shewana3_1544: Shewana3_1544 - hypothetical protein (RefSeq), at 1,801,289 to 1,802,395
_1544
Shewana3_1545: Shewana3_1545 - hypothetical protein (RefSeq), at 1,802,402 to 1,803,313
_1545
Shewana3_1546: Shewana3_1546 - hypothetical protein (RefSeq), at 1,803,444 to 1,803,668
_1546
Shewana3_1547: Shewana3_1547 - hypothetical protein (RefSeq), at 1,803,990 to 1,804,082
_1547
Shewana3_1548: Shewana3_1548 - hypothetical protein (RefSeq), at 1,804,215 to 1,804,649
_1548
Position (kb)
1802
1803
1804 Strain fitness (log2 ratio)
-1
0
1 at 1801.487 kb on - strand, within Shewana3_1544 at 1801.690 kb on + strand, within Shewana3_1544 at 1801.693 kb on - strand, within Shewana3_1544 at 1801.890 kb on - strand, within Shewana3_1544 at 1801.910 kb on + strand, within Shewana3_1544 at 1801.968 kb on - strand, within Shewana3_1544 at 1802.094 kb on - strand, within Shewana3_1544 at 1802.366 kb on + strand at 1802.384 kb on + strand at 1802.541 kb on + strand, within Shewana3_1545 at 1802.826 kb on - strand, within Shewana3_1545 at 1803.018 kb on + strand, within Shewana3_1545 at 1803.026 kb on - strand, within Shewana3_1545 at 1803.300 kb on + strand at 1803.428 kb on + strand at 1803.451 kb on - strand at 1803.560 kb on - strand, within Shewana3_1546 at 1803.891 kb on + strand at 1803.899 kb on - strand at 1803.940 kb on + strand at 1804.311 kb on - strand, within Shewana3_1548
Per-strain Table
Position Strand Gene LocusTag Fraction syringaldehyde 1 mM remove 1,801,487 - Shewana3_1544 0.18 +1.4 1,801,690 + Shewana3_1544 0.36 +0.1 1,801,693 - Shewana3_1544 0.36 -0.2 1,801,890 - Shewana3_1544 0.54 +1.4 1,801,910 + Shewana3_1544 0.56 +0.7 1,801,968 - Shewana3_1544 0.61 -1.4 1,802,094 - Shewana3_1544 0.73 -0.6 1,802,366 + +0.3 1,802,384 + +0.5 1,802,541 + Shewana3_1545 0.15 -0.4 1,802,826 - Shewana3_1545 0.46 +0.6 1,803,018 + Shewana3_1545 0.68 -1.2 1,803,026 - Shewana3_1545 0.68 -0.8 1,803,300 + +0.2 1,803,428 + -0.2 1,803,451 - -0.0 1,803,560 - Shewana3_1546 0.52 -0.2 1,803,891 + -0.1 1,803,899 - +0.2 1,803,940 + +0.1 1,804,311 - Shewana3_1548 0.22 +0.7
Or see this region's nucleotide sequence