Strain Fitness in Shewanella sp. ANA-3 around Shewana3_1544
Experiment: syringaldehyde 1 mM
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | syringaldehyde 1 mM |
---|---|---|---|---|---|
remove | |||||
1,800,526 | + | Shewana3_1542 | 0.75 | -0.1 | |
1,800,526 | + | Shewana3_1542 | 0.75 | +0.2 | |
1,800,607 | - | Shewana3_1542 | 0.84 | -1.8 | |
1,800,871 | + | folX | Shewana3_1543 | 0.12 | -1.8 |
1,801,395 | + | -0.2 | |||
1,801,487 | - | Shewana3_1544 | 0.18 | +1.4 | |
1,801,690 | + | Shewana3_1544 | 0.36 | +0.1 | |
1,801,693 | - | Shewana3_1544 | 0.36 | -0.2 | |
1,801,890 | - | Shewana3_1544 | 0.54 | +1.4 | |
1,801,910 | + | Shewana3_1544 | 0.56 | +0.7 | |
1,801,968 | - | Shewana3_1544 | 0.61 | -1.4 | |
1,802,094 | - | Shewana3_1544 | 0.73 | -0.6 | |
1,802,366 | + | +0.3 | |||
1,802,384 | + | +0.5 | |||
1,802,541 | + | Shewana3_1545 | 0.15 | -0.4 | |
1,802,826 | - | Shewana3_1545 | 0.46 | +0.6 | |
1,803,018 | + | Shewana3_1545 | 0.68 | -1.2 | |
1,803,026 | - | Shewana3_1545 | 0.68 | -0.8 | |
1,803,300 | + | +0.2 |
Or see this region's nucleotide sequence