Experiment: syringaldehyde 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_1484 and Shewana3_1485 are separated by 364 nucleotides Shewana3_1485 and Shewana3_1486 are separated by 199 nucleotides
Shewana3_1484: Shewana3_1484 - amino acid carrier protein (RefSeq), at 1,727,544 to 1,729,028
_1484
Shewana3_1485: Shewana3_1485 - hypothetical protein (RefSeq), at 1,729,393 to 1,729,680
_1485
Shewana3_1486: Shewana3_1486 - DNA topoisomerase III (RefSeq), at 1,729,880 to 1,731,994
_1486
Position (kb)
1729
1730 Strain fitness (log2 ratio)
-1
0
1
2
3 at 1728.627 kb on + strand, within Shewana3_1484 at 1728.655 kb on + strand, within Shewana3_1484 at 1728.866 kb on + strand, within Shewana3_1484 at 1729.138 kb on + strand at 1729.284 kb on - strand at 1729.403 kb on + strand at 1729.634 kb on + strand, within Shewana3_1485 at 1729.642 kb on - strand, within Shewana3_1485 at 1729.658 kb on - strand at 1729.835 kb on - strand at 1729.936 kb on + strand at 1730.079 kb on - strand at 1730.101 kb on + strand, within Shewana3_1486 at 1730.115 kb on - strand, within Shewana3_1486 at 1730.169 kb on - strand, within Shewana3_1486 at 1730.294 kb on - strand, within Shewana3_1486 at 1730.348 kb on - strand, within Shewana3_1486 at 1730.350 kb on + strand, within Shewana3_1486 at 1730.413 kb on + strand, within Shewana3_1486 at 1730.421 kb on - strand, within Shewana3_1486 at 1730.466 kb on + strand, within Shewana3_1486 at 1730.485 kb on + strand, within Shewana3_1486 at 1730.498 kb on - strand, within Shewana3_1486 at 1730.498 kb on - strand, within Shewana3_1486
Per-strain Table
Position Strand Gene LocusTag Fraction syringaldehyde 1 mM remove 1,728,627 + Shewana3_1484 0.73 -0.4 1,728,655 + Shewana3_1484 0.75 +1.4 1,728,866 + Shewana3_1484 0.89 -0.2 1,729,138 + +1.4 1,729,284 - +0.4 1,729,403 + +0.4 1,729,634 + Shewana3_1485 0.84 -1.6 1,729,642 - Shewana3_1485 0.86 +0.0 1,729,658 - -0.6 1,729,835 - -0.6 1,729,936 + +1.8 1,730,079 - -0.6 1,730,101 + Shewana3_1486 0.10 +0.0 1,730,115 - Shewana3_1486 0.11 -1.0 1,730,169 - Shewana3_1486 0.14 -0.8 1,730,294 - Shewana3_1486 0.20 -1.6 1,730,348 - Shewana3_1486 0.22 +1.7 1,730,350 + Shewana3_1486 0.22 -0.8 1,730,413 + Shewana3_1486 0.25 +0.1 1,730,421 - Shewana3_1486 0.26 -1.2 1,730,466 + Shewana3_1486 0.28 +3.4 1,730,485 + Shewana3_1486 0.29 -1.6 1,730,498 - Shewana3_1486 0.29 -1.0 1,730,498 - Shewana3_1486 0.29 -1.0
Or see this region's nucleotide sequence