Strain Fitness in Shewanella sp. ANA-3 around Shewana3_1481

Experiment: syringaldehyde 1 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_1480 and Shewana3_1481 overlap by 8 nucleotidesShewana3_1481 and Shewana3_1482 are separated by 110 nucleotidesShewana3_1482 and Shewana3_1483 are separated by 180 nucleotides Shewana3_1480: Shewana3_1480 - FolC bifunctional protein (RefSeq), at 1,723,007 to 1,724,305 _1480 Shewana3_1481: Shewana3_1481 - sporulation domain-containing protein (RefSeq), at 1,724,298 to 1,725,122 _1481 Shewana3_1482: Shewana3_1482 - colicin V production protein (RefSeq), at 1,725,233 to 1,725,721 _1482 Shewana3_1483: Shewana3_1483 - amidophosphoribosyltransferase (RefSeq), at 1,725,902 to 1,727,416 _1483 Position (kb) 1724 1725 1726Strain fitness (log2 ratio) -2 -1 0 1at 1724.555 kb on + strand, within Shewana3_1481at 1724.716 kb on + strand, within Shewana3_1481at 1725.210 kb on + strandat 1725.334 kb on - strand, within Shewana3_1482at 1725.450 kb on + strand, within Shewana3_1482at 1725.458 kb on - strand, within Shewana3_1482at 1725.591 kb on - strand, within Shewana3_1482at 1725.976 kb on + strandat 1725.976 kb on + strandat 1726.041 kb on - strandat 1726.051 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction syringaldehyde 1 mM
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1,724,555 + Shewana3_1481 0.31 +0.4
1,724,716 + Shewana3_1481 0.51 -2.4
1,725,210 + +1.4
1,725,334 - Shewana3_1482 0.21 -1.0
1,725,450 + Shewana3_1482 0.44 -0.7
1,725,458 - Shewana3_1482 0.46 +1.4
1,725,591 - Shewana3_1482 0.73 +0.4
1,725,976 + -0.5
1,725,976 + -0.2
1,726,041 - +0.4
1,726,051 + -0.4

Or see this region's nucleotide sequence