Experiment: syringaldehyde 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_1471 and Shewana3_1472 are separated by 55 nucleotides Shewana3_1472 and Shewana3_1473 are separated by 3 nucleotides Shewana3_1473 and Shewana3_1474 are separated by 203 nucleotides
Shewana3_1471: Shewana3_1471 - ATP-NAD/AcoX kinase (RefSeq), at 1,710,221 to 1,711,363
_1471
Shewana3_1472: Shewana3_1472 - hypothetical protein (RefSeq), at 1,711,419 to 1,711,700
_1472
Shewana3_1473: Shewana3_1473 - tRNA/rRNA methyltransferase (SpoU) (RefSeq), at 1,711,704 to 1,712,312
_1473
Shewana3_1474: Shewana3_1474 - FAD dependent oxidoreductase (RefSeq), at 1,712,516 to 1,714,438
_1474
Position (kb)
1711
1712 Strain fitness (log2 ratio)
-2
-1
0
1 at 1710.510 kb on - strand, within Shewana3_1471 at 1710.648 kb on + strand, within Shewana3_1471 at 1710.675 kb on + strand, within Shewana3_1471 at 1710.690 kb on - strand, within Shewana3_1471 at 1710.781 kb on + strand, within Shewana3_1471 at 1710.785 kb on + strand, within Shewana3_1471 at 1710.833 kb on - strand, within Shewana3_1471 at 1710.979 kb on + strand, within Shewana3_1471 at 1711.004 kb on - strand, within Shewana3_1471 at 1711.068 kb on + strand, within Shewana3_1471 at 1711.438 kb on - strand at 1711.449 kb on - strand, within Shewana3_1472 at 1711.464 kb on + strand, within Shewana3_1472 at 1711.597 kb on + strand, within Shewana3_1472 at 1711.597 kb on + strand, within Shewana3_1472 at 1711.858 kb on - strand, within Shewana3_1473 at 1711.906 kb on - strand, within Shewana3_1473 at 1711.935 kb on + strand, within Shewana3_1473 at 1711.983 kb on + strand, within Shewana3_1473 at 1712.058 kb on + strand, within Shewana3_1473 at 1712.217 kb on - strand, within Shewana3_1473 at 1712.227 kb on - strand, within Shewana3_1473 at 1712.314 kb on - strand at 1712.321 kb on - strand at 1712.408 kb on - strand at 1712.665 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction syringaldehyde 1 mM remove 1,710,510 - Shewana3_1471 0.25 -2.2 1,710,648 + Shewana3_1471 0.37 -1.1 1,710,675 + Shewana3_1471 0.40 +0.9 1,710,690 - Shewana3_1471 0.41 -0.0 1,710,781 + Shewana3_1471 0.49 -0.3 1,710,785 + Shewana3_1471 0.49 -0.4 1,710,833 - Shewana3_1471 0.54 +1.3 1,710,979 + Shewana3_1471 0.66 +0.0 1,711,004 - Shewana3_1471 0.69 -0.0 1,711,068 + Shewana3_1471 0.74 -0.3 1,711,438 - +0.3 1,711,449 - Shewana3_1472 0.11 -1.2 1,711,464 + Shewana3_1472 0.16 -0.3 1,711,597 + Shewana3_1472 0.63 -2.1 1,711,597 + Shewana3_1472 0.63 -0.9 1,711,858 - Shewana3_1473 0.25 -0.3 1,711,906 - Shewana3_1473 0.33 -1.5 1,711,935 + Shewana3_1473 0.38 -0.2 1,711,983 + Shewana3_1473 0.46 -0.1 1,712,058 + Shewana3_1473 0.58 +0.1 1,712,217 - Shewana3_1473 0.84 -0.7 1,712,227 - Shewana3_1473 0.86 +0.3 1,712,314 - -2.7 1,712,321 - -0.1 1,712,408 - -0.6 1,712,665 + -0.2
Or see this region's nucleotide sequence