Experiment: syringaldehyde 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_1391 and Shewana3_1392 overlap by 14 nucleotides Shewana3_1392 and Shewana3_1393 are separated by 24 nucleotides Shewana3_1393 and Shewana3_1394 overlap by 1 nucleotides Shewana3_1394 and Shewana3_1395 are separated by 10 nucleotides
Shewana3_1391: Shewana3_1391 - glucose-1-phosphate thymidylyltransferase (RefSeq), at 1,606,171 to 1,607,109
_1391
Shewana3_1392: Shewana3_1392 - dTDP-4-dehydrorhamnose 3,5-epimerase (RefSeq), at 1,607,096 to 1,607,632
_1392
Shewana3_1393: Shewana3_1393 - protein of unknown function DUF940, membrane lipoprotein putative (RefSeq), at 1,607,657 to 1,610,032
_1393
Shewana3_1394: Shewana3_1394 - hypothetical protein (RefSeq), at 1,610,032 to 1,610,820
_1394
Shewana3_1395: Shewana3_1395 - putative lipoprotein (RefSeq), at 1,610,831 to 1,611,541
_1395
Position (kb)
1607
1608
1609
1610
1611 Strain fitness (log2 ratio)
-1
0
1 at 1606.765 kb on - strand, within Shewana3_1391 at 1606.970 kb on + strand, within Shewana3_1391 at 1606.970 kb on + strand, within Shewana3_1391 at 1608.131 kb on - strand, within Shewana3_1393 at 1608.205 kb on + strand, within Shewana3_1393 at 1608.956 kb on - strand, within Shewana3_1393 at 1609.037 kb on + strand, within Shewana3_1393 at 1609.199 kb on - strand, within Shewana3_1393 at 1609.369 kb on - strand, within Shewana3_1393 at 1609.533 kb on + strand, within Shewana3_1393 at 1609.635 kb on + strand, within Shewana3_1393 at 1609.687 kb on - strand, within Shewana3_1393 at 1610.133 kb on - strand, within Shewana3_1394 at 1610.252 kb on - strand, within Shewana3_1394 at 1610.485 kb on - strand, within Shewana3_1394 at 1610.583 kb on - strand, within Shewana3_1394 at 1610.824 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction syringaldehyde 1 mM remove 1,606,765 - Shewana3_1391 0.63 -0.7 1,606,970 + Shewana3_1391 0.85 -0.3 1,606,970 + Shewana3_1391 0.85 -1.2 1,608,131 - Shewana3_1393 0.20 +1.3 1,608,205 + Shewana3_1393 0.23 +1.2 1,608,956 - Shewana3_1393 0.55 +1.3 1,609,037 + Shewana3_1393 0.58 +1.3 1,609,199 - Shewana3_1393 0.65 +0.3 1,609,369 - Shewana3_1393 0.72 +0.9 1,609,533 + Shewana3_1393 0.79 +1.3 1,609,635 + Shewana3_1393 0.83 +1.3 1,609,687 - Shewana3_1393 0.85 +1.5 1,610,133 - Shewana3_1394 0.13 -0.2 1,610,252 - Shewana3_1394 0.28 +0.9 1,610,485 - Shewana3_1394 0.57 +0.5 1,610,583 - Shewana3_1394 0.70 +0.0 1,610,824 + +0.3
Or see this region's nucleotide sequence