Experiment: syringaldehyde 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_1360 and Shewana3_1361 are separated by 13 nucleotides Shewana3_1361 and Shewana3_1362 are separated by 15 nucleotides Shewana3_1362 and Shewana3_1363 are separated by 18 nucleotides
Shewana3_1360: Shewana3_1360 - response regulator receiver protein (RefSeq), at 1,572,985 to 1,573,368
_1360
Shewana3_1361: Shewana3_1361 - chemotaxis phosphatase, CheZ (RefSeq), at 1,573,382 to 1,574,119
_1361
Shewana3_1362: Shewana3_1362 - CheA signal transduction histidine kinases (RefSeq), at 1,574,135 to 1,576,423
_1362
Shewana3_1363: Shewana3_1363 - chemotaxis-specific methylesterase (RefSeq), at 1,576,442 to 1,577,566
_1363
Position (kb)
1574
1575
1576
1577 Strain fitness (log2 ratio)
-1
0
1
2
3 at 1573.403 kb on - strand at 1574.551 kb on - strand at 1574.572 kb on + strand, within Shewana3_1362 at 1574.578 kb on + strand, within Shewana3_1362 at 1575.311 kb on + strand, within Shewana3_1362 at 1575.612 kb on + strand, within Shewana3_1362 at 1575.657 kb on - strand, within Shewana3_1362 at 1576.050 kb on + strand, within Shewana3_1362 at 1576.098 kb on - strand, within Shewana3_1362 at 1576.129 kb on + strand, within Shewana3_1362 at 1576.137 kb on - strand, within Shewana3_1362 at 1576.137 kb on - strand, within Shewana3_1362 at 1576.360 kb on - strand at 1576.372 kb on + strand at 1576.382 kb on + strand at 1576.754 kb on + strand, within Shewana3_1363 at 1576.831 kb on - strand, within Shewana3_1363 at 1576.912 kb on - strand, within Shewana3_1363 at 1577.296 kb on + strand, within Shewana3_1363 at 1577.377 kb on + strand, within Shewana3_1363
Per-strain Table
Position Strand Gene LocusTag Fraction syringaldehyde 1 mM remove 1,573,403 - +0.3 1,574,551 - +1.3 1,574,572 + Shewana3_1362 0.19 +2.0 1,574,578 + Shewana3_1362 0.19 +2.3 1,575,311 + Shewana3_1362 0.51 +1.1 1,575,612 + Shewana3_1362 0.65 +1.8 1,575,657 - Shewana3_1362 0.66 -0.7 1,576,050 + Shewana3_1362 0.84 +1.9 1,576,098 - Shewana3_1362 0.86 +3.3 1,576,129 + Shewana3_1362 0.87 +2.2 1,576,137 - Shewana3_1362 0.87 +1.3 1,576,137 - Shewana3_1362 0.87 +0.3 1,576,360 - +0.3 1,576,372 + +1.9 1,576,382 + +2.3 1,576,754 + Shewana3_1363 0.28 +0.6 1,576,831 - Shewana3_1363 0.35 -0.3 1,576,912 - Shewana3_1363 0.42 +1.3 1,577,296 + Shewana3_1363 0.76 +0.5 1,577,377 + Shewana3_1363 0.83 +0.6
Or see this region's nucleotide sequence