Strain Fitness in Shewanella sp. ANA-3 around Shewana3_1348
Experiment: syringaldehyde 1 mM
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | syringaldehyde 1 mM |
---|---|---|---|---|---|
remove | |||||
1,561,470 | + | Shewana3_1347 | 0.55 | +1.0 | |
1,561,725 | - | Shewana3_1347 | 0.70 | -1.4 | |
1,561,727 | + | Shewana3_1347 | 0.70 | +0.8 | |
1,561,856 | + | Shewana3_1347 | 0.77 | +1.3 | |
1,562,002 | - | Shewana3_1347 | 0.86 | +0.1 | |
1,562,017 | + | Shewana3_1347 | 0.86 | +0.4 | |
1,562,468 | + | fliL | Shewana3_1348 | 0.25 | +2.0 |
1,562,705 | + | fliL | Shewana3_1348 | 0.70 | +3.4 |
1,563,175 | + | fliM | Shewana3_1349 | 0.27 | -0.1 |
1,563,241 | - | fliM | Shewana3_1349 | 0.33 | -0.3 |
1,563,608 | - | fliM | Shewana3_1349 | 0.69 | -0.3 |
1,563,635 | + | fliM | Shewana3_1349 | 0.71 | +0.8 |
1,563,692 | + | fliM | Shewana3_1349 | 0.77 | +1.4 |
Or see this region's nucleotide sequence