Experiment: syringaldehyde 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_1305 and Shewana3_1306 are separated by 1 nucleotides Shewana3_1306 and Shewana3_1307 are separated by 2 nucleotides Shewana3_1307 and Shewana3_1308 overlap by 4 nucleotides
Shewana3_1305: Shewana3_1305 - hypothetical protein (RefSeq), at 1,520,128 to 1,520,940
_1305
Shewana3_1306: Shewana3_1306 - hypothetical protein (RefSeq), at 1,520,942 to 1,521,835
_1306
Shewana3_1307: Shewana3_1307 - hypothetical protein (RefSeq), at 1,521,838 to 1,522,539
_1307
Shewana3_1308: Shewana3_1308 - GCN5-related N-acetyltransferase (RefSeq), at 1,522,536 to 1,524,113
_1308
Position (kb)
1521
1522
1523 Strain fitness (log2 ratio)
-1
0
1
2
3 at 1521.018 kb on - strand at 1521.390 kb on - strand, within Shewana3_1306 at 1521.469 kb on + strand, within Shewana3_1306 at 1521.607 kb on - strand, within Shewana3_1306 at 1521.767 kb on - strand at 1521.862 kb on + strand at 1521.958 kb on - strand, within Shewana3_1307 at 1522.025 kb on - strand, within Shewana3_1307 at 1522.027 kb on - strand, within Shewana3_1307 at 1522.029 kb on + strand, within Shewana3_1307 at 1522.029 kb on + strand, within Shewana3_1307 at 1522.029 kb on + strand, within Shewana3_1307 at 1522.029 kb on + strand, within Shewana3_1307 at 1522.029 kb on + strand, within Shewana3_1307 at 1522.037 kb on - strand, within Shewana3_1307 at 1522.037 kb on - strand, within Shewana3_1307 at 1522.037 kb on - strand, within Shewana3_1307 at 1522.037 kb on - strand, within Shewana3_1307 at 1522.037 kb on - strand, within Shewana3_1307 at 1522.037 kb on - strand, within Shewana3_1307 at 1522.037 kb on - strand, within Shewana3_1307 at 1522.051 kb on + strand, within Shewana3_1307 at 1522.268 kb on + strand, within Shewana3_1307 at 1522.276 kb on - strand, within Shewana3_1307 at 1522.278 kb on + strand, within Shewana3_1307 at 1522.321 kb on - strand, within Shewana3_1307 at 1522.321 kb on - strand, within Shewana3_1307 at 1522.321 kb on - strand, within Shewana3_1307 at 1522.374 kb on + strand, within Shewana3_1307 at 1522.412 kb on - strand, within Shewana3_1307 at 1522.783 kb on + strand, within Shewana3_1308 at 1522.791 kb on - strand, within Shewana3_1308 at 1522.957 kb on - strand, within Shewana3_1308 at 1523.038 kb on - strand, within Shewana3_1308 at 1523.048 kb on - strand, within Shewana3_1308 at 1523.048 kb on - strand, within Shewana3_1308 at 1523.048 kb on - strand, within Shewana3_1308 at 1523.074 kb on + strand, within Shewana3_1308 at 1523.179 kb on - strand, within Shewana3_1308 at 1523.289 kb on - strand, within Shewana3_1308 at 1523.385 kb on + strand, within Shewana3_1308
Per-strain Table
Position Strand Gene LocusTag Fraction syringaldehyde 1 mM remove 1,521,018 - +0.4 1,521,390 - Shewana3_1306 0.50 +1.3 1,521,469 + Shewana3_1306 0.59 +0.3 1,521,607 - Shewana3_1306 0.74 -1.0 1,521,767 - -0.3 1,521,862 + -1.5 1,521,958 - Shewana3_1307 0.17 -0.2 1,522,025 - Shewana3_1307 0.27 -1.7 1,522,027 - Shewana3_1307 0.27 +1.8 1,522,029 + Shewana3_1307 0.27 +0.1 1,522,029 + Shewana3_1307 0.27 -0.3 1,522,029 + Shewana3_1307 0.27 -0.7 1,522,029 + Shewana3_1307 0.27 +0.3 1,522,029 + Shewana3_1307 0.27 +2.9 1,522,037 - Shewana3_1307 0.28 +0.9 1,522,037 - Shewana3_1307 0.28 +0.4 1,522,037 - Shewana3_1307 0.28 +0.4 1,522,037 - Shewana3_1307 0.28 +0.6 1,522,037 - Shewana3_1307 0.28 +1.0 1,522,037 - Shewana3_1307 0.28 +0.9 1,522,037 - Shewana3_1307 0.28 +1.9 1,522,051 + Shewana3_1307 0.30 +1.9 1,522,268 + Shewana3_1307 0.61 -0.3 1,522,276 - Shewana3_1307 0.62 +0.3 1,522,278 + Shewana3_1307 0.63 +0.3 1,522,321 - Shewana3_1307 0.69 +0.5 1,522,321 - Shewana3_1307 0.69 -0.7 1,522,321 - Shewana3_1307 0.69 -0.1 1,522,374 + Shewana3_1307 0.76 -0.7 1,522,412 - Shewana3_1307 0.82 -0.7 1,522,783 + Shewana3_1308 0.16 -1.0 1,522,791 - Shewana3_1308 0.16 +2.6 1,522,957 - Shewana3_1308 0.27 -0.3 1,523,038 - Shewana3_1308 0.32 +0.7 1,523,048 - Shewana3_1308 0.32 +1.7 1,523,048 - Shewana3_1308 0.32 -0.4 1,523,048 - Shewana3_1308 0.32 -1.3 1,523,074 + Shewana3_1308 0.34 -1.5 1,523,179 - Shewana3_1308 0.41 +0.3 1,523,289 - Shewana3_1308 0.48 +0.1 1,523,385 + Shewana3_1308 0.54 +0.7
Or see this region's nucleotide sequence