Experiment: syringaldehyde 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_1173 and Shewana3_1174 overlap by 13 nucleotides Shewana3_1174 and Shewana3_1175 are separated by 84 nucleotides Shewana3_1175 and Shewana3_1176 are separated by 94 nucleotides Shewana3_1176 and Shewana3_1177 are separated by 153 nucleotides Shewana3_1177 and Shewana3_R0049 are separated by 57 nucleotides Shewana3_R0049 and Shewana3_R0050 are separated by 6 nucleotides
Shewana3_1173: Shewana3_1173 - hypothetical protein (RefSeq), at 1,383,605 to 1,384,177
_1173
Shewana3_1174: Shewana3_1174 - hypothetical protein (RefSeq), at 1,384,165 to 1,384,713
_1174
Shewana3_1175: Shewana3_1175 - hypothetical protein (RefSeq), at 1,384,798 to 1,385,019
_1175
Shewana3_1176: Shewana3_1176 - hypothetical protein (RefSeq), at 1,385,114 to 1,385,458
_1176
Shewana3_1177: Shewana3_1177 - hypothetical protein (RefSeq), at 1,385,612 to 1,385,797
_1177
Shewana3_R0049: Shewana3_R0049 - tRNA-Thr (RefSeq), at 1,385,855 to 1,385,930
_R0049
Shewana3_R0050: Shewana3_R0050 - tRNA-Phe (RefSeq), at 1,385,937 to 1,386,012
_R0050
Position (kb) 1384
1385
1386 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 1384.207 kb on + strand at 1384.209 kb on - strand at 1384.475 kb on + strand, within Shewana3_1174 at 1384.538 kb on + strand, within Shewana3_1174 at 1384.564 kb on + strand, within Shewana3_1174 at 1384.766 kb on + strand at 1384.774 kb on - strand at 1384.774 kb on - strand at 1384.789 kb on - strand at 1384.942 kb on - strand, within Shewana3_1175 at 1385.049 kb on + strand at 1385.140 kb on - strand at 1385.464 kb on - strand at 1385.565 kb on + strand at 1385.573 kb on - strand at 1385.573 kb on - strand at 1385.723 kb on + strand, within Shewana3_1177 at 1385.769 kb on + strand, within Shewana3_1177
Per-strain Table
Position Strand Gene LocusTag Fraction syringaldehyde 1 mM remove 1,384,207 + -0.4 1,384,209 - +0.4 1,384,475 + Shewana3_1174 0.56 +0.8 1,384,538 + Shewana3_1174 0.68 -0.6 1,384,564 + Shewana3_1174 0.73 +0.4 1,384,766 + -1.0 1,384,774 - -1.3 1,384,774 - +1.9 1,384,789 - -0.2 1,384,942 - Shewana3_1175 0.65 -1.4 1,385,049 + +0.5 1,385,140 - +0.2 1,385,464 - -0.1 1,385,565 + -3.1 1,385,573 - +0.0 1,385,573 - +0.4 1,385,723 + Shewana3_1177 0.60 -0.2 1,385,769 + Shewana3_1177 0.84 -0.4
Or see this region's nucleotide sequence