Strain Fitness in Shewanella sp. ANA-3 around Shewana3_1029

Experiment: syringaldehyde 1 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntsecG and Shewana3_R0038 are separated by 11 nucleotidesShewana3_R0038 and Shewana3_R0039 are separated by 83 nucleotidesShewana3_R0039 and Shewana3_1028 are separated by 170 nucleotidesShewana3_1028 and nusA are separated by 29 nucleotidesnusA and infB are separated by 25 nucleotides Shewana3_1027: secG - preprotein translocase subunit SecG (RefSeq), at 1,199,443 to 1,199,775 secG Shewana3_R0038: Shewana3_R0038 - tRNA-Leu (RefSeq), at 1,199,787 to 1,199,873 _R0038 Shewana3_R0039: Shewana3_R0039 - tRNA-Met (RefSeq), at 1,199,957 to 1,200,033 _R0039 Shewana3_1028: Shewana3_1028 - hypothetical protein (RefSeq), at 1,200,204 to 1,200,659 _1028 Shewana3_1029: nusA - transcription elongation factor NusA (RefSeq), at 1,200,689 to 1,202,188 nusA Shewana3_1030: infB - translation initiation factor IF-2 (RefSeq), at 1,202,214 to 1,204,883 infB Position (kb) 1200 1201 1202 1203Strain fitness (log2 ratio) -3 -2 -1 0 1at 1201.970 kb on + strand, within nusAat 1201.980 kb on + strand, within nusAat 1201.980 kb on + strand, within nusAat 1202.027 kb on + strand, within nusA

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Per-strain Table

Position Strand Gene LocusTag Fraction syringaldehyde 1 mM
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1,201,970 + nusA Shewana3_1029 0.85 +0.0
1,201,980 + nusA Shewana3_1029 0.86 -2.9
1,201,980 + nusA Shewana3_1029 0.86 -1.0
1,202,027 + nusA Shewana3_1029 0.89 -0.5

Or see this region's nucleotide sequence