Strain Fitness in Shewanella sp. ANA-3 around Shewana3_1017

Experiment: syringaldehyde 1 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_1016 and Shewana3_1017 are separated by 250 nucleotidesShewana3_1017 and Shewana3_1018 are separated by 302 nucleotides Shewana3_1016: Shewana3_1016 - hypothetical protein (RefSeq), at 1,187,467 to 1,188,285 _1016 Shewana3_1017: Shewana3_1017 - transcription elongation factor GreA (RefSeq), at 1,188,536 to 1,189,012 _1017 Shewana3_1018: Shewana3_1018 - hypothetical protein (RefSeq), at 1,189,315 to 1,189,842 _1018 Position (kb) 1188 1189 1190Strain fitness (log2 ratio) -2 -1 0 1 2at 1187.594 kb on + strand, within Shewana3_1016at 1187.672 kb on - strand, within Shewana3_1016at 1187.751 kb on - strand, within Shewana3_1016at 1187.913 kb on + strand, within Shewana3_1016at 1188.358 kb on + strandat 1188.358 kb on + strandat 1188.444 kb on + strandat 1188.478 kb on + strandat 1188.493 kb on - strandat 1188.655 kb on - strand, within Shewana3_1017at 1188.686 kb on - strand, within Shewana3_1017at 1189.501 kb on - strand, within Shewana3_1018at 1189.622 kb on - strand, within Shewana3_1018

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Per-strain Table

Position Strand Gene LocusTag Fraction syringaldehyde 1 mM
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1,187,594 + Shewana3_1016 0.16 -0.3
1,187,672 - Shewana3_1016 0.25 -1.2
1,187,751 - Shewana3_1016 0.35 -0.0
1,187,913 + Shewana3_1016 0.54 +1.8
1,188,358 + -0.5
1,188,358 + -0.1
1,188,444 + -0.2
1,188,478 + -0.1
1,188,493 - -0.2
1,188,655 - Shewana3_1017 0.25 +1.4
1,188,686 - Shewana3_1017 0.31 -1.1
1,189,501 - Shewana3_1018 0.35 -2.4
1,189,622 - Shewana3_1018 0.58 -0.2

Or see this region's nucleotide sequence