Experiment: syringaldehyde 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_0823 and Shewana3_0824 are separated by 53 nucleotides Shewana3_0824 and Shewana3_0825 are separated by 133 nucleotides Shewana3_0825 and Shewana3_0826 are separated by 107 nucleotides
Shewana3_0823: Shewana3_0823 - adenylate cyclase (RefSeq), at 954,034 to 955,545
_0823
Shewana3_0824: Shewana3_0824 - Ion transport 2 domain-containing protein (RefSeq), at 955,599 to 956,423
_0824
Shewana3_0825: Shewana3_0825 - hypothetical protein (RefSeq), at 956,557 to 956,886
_0825
Shewana3_0826: Shewana3_0826 - hypothetical protein (RefSeq), at 956,994 to 957,647
_0826
Position (kb) 955
956
957 Strain fitness (log2 ratio) -2
-1
0
1 at 954.603 kb on - strand, within Shewana3_0823 at 954.608 kb on - strand, within Shewana3_0823 at 954.653 kb on + strand, within Shewana3_0823 at 954.653 kb on + strand, within Shewana3_0823 at 954.661 kb on - strand, within Shewana3_0823 at 954.701 kb on + strand, within Shewana3_0823 at 954.739 kb on + strand, within Shewana3_0823 at 955.021 kb on + strand, within Shewana3_0823 at 955.094 kb on + strand, within Shewana3_0823 at 955.157 kb on + strand, within Shewana3_0823 at 955.222 kb on - strand, within Shewana3_0823 at 955.254 kb on + strand, within Shewana3_0823 at 955.296 kb on - strand, within Shewana3_0823 at 955.329 kb on - strand, within Shewana3_0823 at 955.432 kb on + strand at 955.463 kb on + strand at 955.463 kb on + strand at 955.471 kb on - strand at 955.477 kb on + strand at 955.746 kb on + strand, within Shewana3_0824 at 956.009 kb on - strand, within Shewana3_0824 at 956.024 kb on + strand, within Shewana3_0824 at 956.134 kb on - strand, within Shewana3_0824 at 956.306 kb on + strand, within Shewana3_0824 at 956.306 kb on + strand, within Shewana3_0824 at 956.402 kb on + strand at 956.586 kb on - strand at 956.703 kb on - strand, within Shewana3_0825 at 956.861 kb on + strand at 957.042 kb on + strand at 957.167 kb on + strand, within Shewana3_0826 at 957.217 kb on - strand, within Shewana3_0826 at 957.217 kb on - strand, within Shewana3_0826 at 957.217 kb on - strand, within Shewana3_0826
Per-strain Table
Position Strand Gene LocusTag Fraction syringaldehyde 1 mM remove 954,603 - Shewana3_0823 0.38 -0.6 954,608 - Shewana3_0823 0.38 -0.5 954,653 + Shewana3_0823 0.41 -0.5 954,653 + Shewana3_0823 0.41 -0.2 954,661 - Shewana3_0823 0.41 +0.2 954,701 + Shewana3_0823 0.44 -0.9 954,739 + Shewana3_0823 0.47 +0.0 955,021 + Shewana3_0823 0.65 -0.7 955,094 + Shewana3_0823 0.70 -0.4 955,157 + Shewana3_0823 0.74 +0.6 955,222 - Shewana3_0823 0.79 -0.1 955,254 + Shewana3_0823 0.81 -0.1 955,296 - Shewana3_0823 0.83 -0.3 955,329 - Shewana3_0823 0.86 -0.4 955,432 + -0.0 955,463 + +0.0 955,463 + +0.3 955,471 - +0.1 955,477 + +0.3 955,746 + Shewana3_0824 0.18 +0.7 956,009 - Shewana3_0824 0.50 +0.4 956,024 + Shewana3_0824 0.52 +0.1 956,134 - Shewana3_0824 0.65 -0.7 956,306 + Shewana3_0824 0.86 +1.1 956,306 + Shewana3_0824 0.86 -0.5 956,402 + +0.5 956,586 - -0.5 956,703 - Shewana3_0825 0.44 -0.0 956,861 + -0.7 957,042 + -1.1 957,167 + Shewana3_0826 0.26 -0.6 957,217 - Shewana3_0826 0.34 -1.3 957,217 - Shewana3_0826 0.34 -2.1 957,217 - Shewana3_0826 0.34 -0.2
Or see this region's nucleotide sequence