Experiment: syringaldehyde 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_0739 and Shewana3_R0028 are separated by 152 nucleotides Shewana3_R0028 and Shewana3_0740 are separated by 141 nucleotides Shewana3_0740 and modC are separated by 241 nucleotides
Shewana3_0739: Shewana3_0739 - methyl-accepting chemotaxis sensory transducer (RefSeq), at 858,135 to 859,724
_0739
Shewana3_R0028: Shewana3_R0028 - tRNA-Leu (RefSeq), at 859,877 to 859,963
_R0028
Shewana3_0740: Shewana3_0740 - hypothetical protein (RefSeq), at 860,105 to 860,437
_0740
Shewana3_0741: modC - molybdate transporter ATP-binding protein (RefSeq), at 860,679 to 861,764
modC
Position (kb) 860
861 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 859.225 kb on + strand, within Shewana3_0739 at 859.225 kb on + strand, within Shewana3_0739 at 859.233 kb on - strand, within Shewana3_0739 at 859.233 kb on - strand, within Shewana3_0739 at 859.233 kb on - strand, within Shewana3_0739 at 859.233 kb on - strand, within Shewana3_0739 at 859.233 kb on - strand, within Shewana3_0739 at 859.233 kb on - strand, within Shewana3_0739 at 859.233 kb on - strand, within Shewana3_0739 at 859.469 kb on - strand, within Shewana3_0739 at 859.470 kb on - strand, within Shewana3_0739 at 859.617 kb on + strand at 859.705 kb on - strand at 860.039 kb on + strand at 860.188 kb on + strand, within Shewana3_0740 at 860.302 kb on - strand, within Shewana3_0740 at 860.327 kb on + strand, within Shewana3_0740 at 860.335 kb on - strand, within Shewana3_0740 at 860.336 kb on - strand, within Shewana3_0740 at 860.433 kb on + strand at 860.479 kb on - strand at 860.779 kb on + strand at 861.256 kb on + strand, within modC at 861.305 kb on - strand, within modC at 861.305 kb on - strand, within modC at 861.331 kb on + strand, within modC at 861.375 kb on + strand, within modC at 861.399 kb on + strand, within modC
Per-strain Table
Position Strand Gene LocusTag Fraction syringaldehyde 1 mM remove 859,225 + Shewana3_0739 0.69 -1.1 859,225 + Shewana3_0739 0.69 -0.9 859,233 - Shewana3_0739 0.69 +0.1 859,233 - Shewana3_0739 0.69 -0.3 859,233 - Shewana3_0739 0.69 -0.3 859,233 - Shewana3_0739 0.69 -0.1 859,233 - Shewana3_0739 0.69 -0.1 859,233 - Shewana3_0739 0.69 -0.5 859,233 - Shewana3_0739 0.69 +0.0 859,469 - Shewana3_0739 0.84 -0.4 859,470 - Shewana3_0739 0.84 -0.3 859,617 + -0.0 859,705 - -0.9 860,039 + -3.0 860,188 + Shewana3_0740 0.25 -0.5 860,302 - Shewana3_0740 0.59 -1.4 860,327 + Shewana3_0740 0.67 -0.0 860,335 - Shewana3_0740 0.69 -0.4 860,336 - Shewana3_0740 0.69 -0.3 860,433 + +0.1 860,479 - +0.1 860,779 + -0.2 861,256 + modC Shewana3_0741 0.53 -0.5 861,305 - modC Shewana3_0741 0.58 -0.3 861,305 - modC Shewana3_0741 0.58 -0.0 861,331 + modC Shewana3_0741 0.60 -0.2 861,375 + modC Shewana3_0741 0.64 -0.6 861,399 + modC Shewana3_0741 0.66 -0.4
Or see this region's nucleotide sequence