Experiment: syringaldehyde 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_0622 and Shewana3_0623 are separated by 77 nucleotides Shewana3_0623 and Shewana3_0624 are separated by 77 nucleotides Shewana3_0624 and Shewana3_0625 are separated by 170 nucleotides
Shewana3_0622: Shewana3_0622 - ATP-dependent helicase HrpB (RefSeq), at 728,053 to 730,560
_0622
Shewana3_0623: Shewana3_0623 - penicillin-binding protein 1B (RefSeq), at 730,638 to 732,932
_0623
Shewana3_0624: Shewana3_0624 - PpiC-type peptidyl-prolyl cis-trans isomerase (RefSeq), at 733,010 to 733,288
_0624
Shewana3_0625: Shewana3_0625 - hypothetical protein (RefSeq), at 733,459 to 733,896
_0625
Position (kb) 730
731
732
733 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 729.679 kb on + strand, within Shewana3_0622 at 730.016 kb on - strand, within Shewana3_0622 at 730.234 kb on - strand, within Shewana3_0622 at 730.447 kb on - strand at 730.561 kb on + strand at 730.686 kb on - strand at 730.786 kb on + strand at 730.865 kb on - strand at 730.874 kb on + strand, within Shewana3_0623 at 730.901 kb on - strand, within Shewana3_0623 at 731.037 kb on + strand, within Shewana3_0623 at 731.231 kb on - strand, within Shewana3_0623 at 731.292 kb on - strand, within Shewana3_0623 at 731.299 kb on + strand, within Shewana3_0623 at 731.376 kb on + strand, within Shewana3_0623 at 731.384 kb on - strand, within Shewana3_0623 at 731.455 kb on - strand, within Shewana3_0623 at 731.482 kb on + strand, within Shewana3_0623 at 731.482 kb on + strand, within Shewana3_0623 at 731.482 kb on + strand, within Shewana3_0623 at 731.509 kb on - strand, within Shewana3_0623 at 731.526 kb on + strand, within Shewana3_0623 at 731.594 kb on + strand, within Shewana3_0623 at 731.594 kb on + strand, within Shewana3_0623 at 731.599 kb on + strand, within Shewana3_0623 at 731.607 kb on - strand, within Shewana3_0623 at 731.626 kb on + strand, within Shewana3_0623 at 731.626 kb on + strand, within Shewana3_0623 at 731.660 kb on + strand, within Shewana3_0623 at 731.697 kb on + strand, within Shewana3_0623 at 731.717 kb on + strand, within Shewana3_0623 at 731.778 kb on - strand, within Shewana3_0623 at 731.936 kb on + strand, within Shewana3_0623 at 732.006 kb on + strand, within Shewana3_0623 at 732.428 kb on - strand, within Shewana3_0623 at 732.447 kb on + strand, within Shewana3_0623 at 732.573 kb on + strand, within Shewana3_0623 at 732.709 kb on + strand at 732.865 kb on - strand at 732.877 kb on - strand at 733.173 kb on - strand, within Shewana3_0624 at 733.176 kb on + strand, within Shewana3_0624 at 733.219 kb on + strand, within Shewana3_0624 at 733.304 kb on - strand at 733.438 kb on - strand at 733.503 kb on + strand, within Shewana3_0625 at 733.503 kb on + strand, within Shewana3_0625 at 733.511 kb on - strand, within Shewana3_0625 at 733.511 kb on - strand, within Shewana3_0625 at 733.511 kb on - strand, within Shewana3_0625 at 733.511 kb on - strand, within Shewana3_0625 at 733.511 kb on - strand, within Shewana3_0625 at 733.816 kb on + strand, within Shewana3_0625 at 733.824 kb on - strand, within Shewana3_0625 at 733.831 kb on - strand, within Shewana3_0625 at 733.915 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction syringaldehyde 1 mM remove 729,679 + Shewana3_0622 0.65 -0.3 730,016 - Shewana3_0622 0.78 -0.1 730,234 - Shewana3_0622 0.87 -0.4 730,447 - -0.2 730,561 + -0.1 730,686 - -3.8 730,786 + -0.9 730,865 - -2.4 730,874 + Shewana3_0623 0.10 +1.0 730,901 - Shewana3_0623 0.11 -1.1 731,037 + Shewana3_0623 0.17 -1.4 731,231 - Shewana3_0623 0.26 -0.6 731,292 - Shewana3_0623 0.28 -0.9 731,299 + Shewana3_0623 0.29 -1.5 731,376 + Shewana3_0623 0.32 -0.9 731,384 - Shewana3_0623 0.33 -1.1 731,455 - Shewana3_0623 0.36 -0.9 731,482 + Shewana3_0623 0.37 +0.8 731,482 + Shewana3_0623 0.37 -1.1 731,482 + Shewana3_0623 0.37 -0.5 731,509 - Shewana3_0623 0.38 -1.1 731,526 + Shewana3_0623 0.39 -1.0 731,594 + Shewana3_0623 0.42 -1.3 731,594 + Shewana3_0623 0.42 -0.5 731,599 + Shewana3_0623 0.42 -0.4 731,607 - Shewana3_0623 0.42 -2.5 731,626 + Shewana3_0623 0.43 -2.0 731,626 + Shewana3_0623 0.43 -1.1 731,660 + Shewana3_0623 0.45 -0.3 731,697 + Shewana3_0623 0.46 +3.0 731,717 + Shewana3_0623 0.47 -0.7 731,778 - Shewana3_0623 0.50 -1.2 731,936 + Shewana3_0623 0.57 -0.2 732,006 + Shewana3_0623 0.60 -1.1 732,428 - Shewana3_0623 0.78 -1.3 732,447 + Shewana3_0623 0.79 -0.5 732,573 + Shewana3_0623 0.84 -3.5 732,709 + -1.1 732,865 - +0.9 732,877 - +0.1 733,173 - Shewana3_0624 0.58 -0.6 733,176 + Shewana3_0624 0.59 +0.3 733,219 + Shewana3_0624 0.75 -0.0 733,304 - -1.6 733,438 - -0.2 733,503 + Shewana3_0625 0.10 -0.3 733,503 + Shewana3_0625 0.10 -0.6 733,511 - Shewana3_0625 0.12 -0.1 733,511 - Shewana3_0625 0.12 -0.0 733,511 - Shewana3_0625 0.12 -0.2 733,511 - Shewana3_0625 0.12 -0.3 733,511 - Shewana3_0625 0.12 -0.0 733,816 + Shewana3_0625 0.82 -0.4 733,824 - Shewana3_0625 0.83 -0.4 733,831 - Shewana3_0625 0.85 -0.3 733,915 + +0.3
Or see this region's nucleotide sequence