Experiment: syringaldehyde 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_0602 and Shewana3_0603 overlap by 1 nucleotides Shewana3_0603 and sspA are separated by 96 nucleotides sspA and Shewana3_0605 overlap by 1 nucleotides
Shewana3_0602: Shewana3_0602 - cytochrome b/b6 domain-containing protein (RefSeq), at 705,513 to 706,727
_0602
Shewana3_0603: Shewana3_0603 - cytochrome c1 (RefSeq), at 706,727 to 707,425
_0603
Shewana3_0604: sspA - stringent starvation protein A (RefSeq), at 707,522 to 708,151
sspA
Shewana3_0605: Shewana3_0605 - ClpXP protease specificity-enhancing factor (RefSeq), at 708,151 to 708,588
_0605
Position (kb) 706
707
708 Strain fitness (log2 ratio) -2
-1
0
1 at 706.009 kb on + strand, within Shewana3_0602 at 706.099 kb on - strand, within Shewana3_0602 at 706.396 kb on - strand, within Shewana3_0602 at 706.489 kb on + strand, within Shewana3_0602 at 706.594 kb on + strand, within Shewana3_0602 at 707.094 kb on + strand, within Shewana3_0603 at 707.202 kb on + strand, within Shewana3_0603 at 707.414 kb on + strand at 707.506 kb on + strand at 707.728 kb on + strand, within sspA
Per-strain Table
Position Strand Gene LocusTag Fraction syringaldehyde 1 mM remove 706,009 + Shewana3_0602 0.41 -1.1 706,099 - Shewana3_0602 0.48 -0.5 706,396 - Shewana3_0602 0.73 +1.5 706,489 + Shewana3_0602 0.80 -1.5 706,594 + Shewana3_0602 0.89 -2.5 707,094 + Shewana3_0603 0.53 -1.0 707,202 + Shewana3_0603 0.68 -1.3 707,414 + -0.0 707,506 + -0.5 707,728 + sspA Shewana3_0604 0.33 -0.4
Or see this region's nucleotide sequence