Strain Fitness in Shewanella sp. ANA-3 around Shewana3_0599

Experiment: syringaldehyde 1 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_0598 and Shewana3_0599 are separated by 36 nucleotidesShewana3_0599 and Shewana3_0600 are separated by 3 nucleotides Shewana3_0598: Shewana3_0598 - GTP-binding protein, HSR1-related (RefSeq), at 701,168 to 702,475 _0598 Shewana3_0599: Shewana3_0599 - HflK protein (RefSeq), at 702,512 to 703,657 _0599 Shewana3_0600: Shewana3_0600 - HflC protein (RefSeq), at 703,661 to 704,554 _0600 Position (kb) 702 703 704Strain fitness (log2 ratio) -2 -1 0 1 2 3at 701.806 kb on + strand, within Shewana3_0598at 702.538 kb on + strandat 702.657 kb on + strand, within Shewana3_0599at 702.657 kb on + strand, within Shewana3_0599at 702.777 kb on + strand, within Shewana3_0599at 702.955 kb on + strand, within Shewana3_0599at 702.992 kb on + strand, within Shewana3_0599at 703.432 kb on + strand, within Shewana3_0599at 703.546 kb on + strandat 703.546 kb on + strandat 703.604 kb on + strandat 704.209 kb on + strand, within Shewana3_0600at 704.263 kb on + strand, within Shewana3_0600at 704.481 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction syringaldehyde 1 mM
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701,806 + Shewana3_0598 0.49 -0.1
702,538 + +0.5
702,657 + Shewana3_0599 0.13 +0.5
702,657 + Shewana3_0599 0.13 -2.0
702,777 + Shewana3_0599 0.23 +0.5
702,955 + Shewana3_0599 0.39 +1.5
702,992 + Shewana3_0599 0.42 +3.1
703,432 + Shewana3_0599 0.80 -0.5
703,546 + -1.1
703,546 + -0.6
703,604 + +0.0
704,209 + Shewana3_0600 0.61 -0.1
704,263 + Shewana3_0600 0.67 -0.5
704,481 + +0.2

Or see this region's nucleotide sequence