Experiment: syringaldehyde 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_0579 and Shewana3_0580 are separated by 107 nucleotides Shewana3_0580 and Shewana3_0581 are separated by 199 nucleotides Shewana3_0581 and Shewana3_0582 are separated by 248 nucleotides
Shewana3_0579: Shewana3_0579 - hypothetical protein (RefSeq), at 680,146 to 680,484
_0579
Shewana3_0580: Shewana3_0580 - thiopurine S-methyltransferase (RefSeq), at 680,592 to 681,248
_0580
Shewana3_0581: Shewana3_0581 - BFD/(2Fe-2S)-binding domain-containing protein (RefSeq), at 681,448 to 681,639
_0581
Shewana3_0582: Shewana3_0582 - methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor (RefSeq), at 681,888 to 683,462
_0582
Position (kb) 681
682 Strain fitness (log2 ratio) -1
0
1 at 680.473 kb on + strand at 680.481 kb on - strand at 680.502 kb on - strand at 680.909 kb on - strand, within Shewana3_0580 at 680.939 kb on + strand, within Shewana3_0580 at 680.947 kb on - strand, within Shewana3_0580 at 681.035 kb on - strand, within Shewana3_0580 at 681.575 kb on - strand, within Shewana3_0581 at 682.030 kb on + strand at 682.251 kb on - strand, within Shewana3_0582 at 682.261 kb on - strand, within Shewana3_0582 at 682.321 kb on + strand, within Shewana3_0582 at 682.321 kb on + strand, within Shewana3_0582 at 682.529 kb on + strand, within Shewana3_0582 at 682.529 kb on + strand, within Shewana3_0582 at 682.529 kb on + strand, within Shewana3_0582 at 682.537 kb on - strand, within Shewana3_0582 at 682.537 kb on - strand, within Shewana3_0582
Per-strain Table
Position Strand Gene LocusTag Fraction syringaldehyde 1 mM remove 680,473 + -0.4 680,481 - +0.3 680,502 - -0.7 680,909 - Shewana3_0580 0.48 -0.4 680,939 + Shewana3_0580 0.53 -0.0 680,947 - Shewana3_0580 0.54 +1.4 681,035 - Shewana3_0580 0.67 +0.3 681,575 - Shewana3_0581 0.66 +0.6 682,030 + -0.1 682,251 - Shewana3_0582 0.23 -0.4 682,261 - Shewana3_0582 0.24 -0.0 682,321 + Shewana3_0582 0.27 +0.3 682,321 + Shewana3_0582 0.27 +0.2 682,529 + Shewana3_0582 0.41 +0.4 682,529 + Shewana3_0582 0.41 +0.3 682,529 + Shewana3_0582 0.41 +0.1 682,537 - Shewana3_0582 0.41 -1.0 682,537 - Shewana3_0582 0.41 -0.4
Or see this region's nucleotide sequence