Experiment: syringaldehyde 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_0489 and Shewana3_0490 are separated by 58 nucleotides Shewana3_0490 and Shewana3_0491 are separated by 93 nucleotides Shewana3_0491 and Shewana3_0492 are separated by 64 nucleotides Shewana3_0492 and Shewana3_0493 are separated by 86 nucleotides
Shewana3_0489: Shewana3_0489 - cytochrome c, putative (RefSeq), at 571,892 to 574,021
_0489
Shewana3_0490: Shewana3_0490 - rhodanese domain-containing protein (RefSeq), at 574,080 to 574,523
_0490
Shewana3_0491: Shewana3_0491 - FKBP-type peptidyl-prolyl isomerase domain-containing protein (RefSeq), at 574,617 to 575,396
_0491
Shewana3_0492: Shewana3_0492 - formate-dependent nitrite reductase, NrfG protein (RefSeq), at 575,461 to 576,135
_0492
Shewana3_0493: Shewana3_0493 - 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein (RefSeq), at 576,222 to 576,929
_0493
Position (kb) 574
575
576 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 573.671 kb on - strand, within Shewana3_0489 at 573.673 kb on + strand, within Shewana3_0489 at 573.681 kb on - strand, within Shewana3_0489 at 573.681 kb on - strand, within Shewana3_0489 at 573.734 kb on + strand, within Shewana3_0489 at 573.742 kb on - strand, within Shewana3_0489 at 573.824 kb on - strand at 573.953 kb on + strand at 573.953 kb on + strand at 573.953 kb on + strand at 573.953 kb on + strand at 573.961 kb on - strand at 573.961 kb on - strand at 573.961 kb on - strand at 574.031 kb on + strand at 574.039 kb on - strand at 574.066 kb on - strand at 574.176 kb on + strand, within Shewana3_0490 at 574.320 kb on + strand, within Shewana3_0490 at 574.455 kb on + strand, within Shewana3_0490 at 574.555 kb on - strand at 574.670 kb on - strand at 574.723 kb on - strand, within Shewana3_0491 at 574.795 kb on + strand, within Shewana3_0491 at 574.887 kb on + strand, within Shewana3_0491 at 574.895 kb on - strand, within Shewana3_0491 at 574.897 kb on + strand, within Shewana3_0491 at 574.897 kb on + strand, within Shewana3_0491 at 574.897 kb on + strand, within Shewana3_0491 at 575.049 kb on + strand, within Shewana3_0491 at 575.160 kb on - strand, within Shewana3_0491 at 575.175 kb on + strand, within Shewana3_0491 at 575.180 kb on + strand, within Shewana3_0491 at 575.209 kb on + strand, within Shewana3_0491 at 575.265 kb on + strand, within Shewana3_0491 at 575.397 kb on + strand at 575.397 kb on + strand at 575.409 kb on + strand at 575.441 kb on + strand at 575.449 kb on - strand at 575.486 kb on - strand at 575.541 kb on - strand, within Shewana3_0492 at 575.584 kb on - strand, within Shewana3_0492 at 575.590 kb on + strand, within Shewana3_0492 at 575.592 kb on + strand, within Shewana3_0492 at 575.825 kb on - strand, within Shewana3_0492 at 575.860 kb on - strand, within Shewana3_0492 at 575.860 kb on - strand, within Shewana3_0492 at 575.890 kb on - strand, within Shewana3_0492 at 576.084 kb on + strand at 576.092 kb on - strand at 576.274 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction syringaldehyde 1 mM remove 573,671 - Shewana3_0489 0.84 -0.3 573,673 + Shewana3_0489 0.84 +0.1 573,681 - Shewana3_0489 0.84 +0.1 573,681 - Shewana3_0489 0.84 +0.4 573,734 + Shewana3_0489 0.86 +0.4 573,742 - Shewana3_0489 0.87 -0.4 573,824 - -0.5 573,953 + -0.0 573,953 + +0.6 573,953 + +0.4 573,953 + +0.2 573,961 - -0.3 573,961 - -0.4 573,961 - -0.0 574,031 + +0.1 574,039 - -0.3 574,066 - +0.2 574,176 + Shewana3_0490 0.22 +0.1 574,320 + Shewana3_0490 0.54 +0.1 574,455 + Shewana3_0490 0.84 +0.2 574,555 - +0.3 574,670 - +0.2 574,723 - Shewana3_0491 0.14 +0.0 574,795 + Shewana3_0491 0.23 +0.3 574,887 + Shewana3_0491 0.35 -2.9 574,895 - Shewana3_0491 0.36 -0.2 574,897 + Shewana3_0491 0.36 -0.5 574,897 + Shewana3_0491 0.36 +0.1 574,897 + Shewana3_0491 0.36 +0.5 575,049 + Shewana3_0491 0.55 +0.7 575,160 - Shewana3_0491 0.70 -0.4 575,175 + Shewana3_0491 0.72 +0.9 575,180 + Shewana3_0491 0.72 -0.2 575,209 + Shewana3_0491 0.76 -0.3 575,265 + Shewana3_0491 0.83 -0.2 575,397 + -0.8 575,397 + +0.7 575,409 + +1.8 575,441 + -0.0 575,449 - -1.8 575,486 - -0.7 575,541 - Shewana3_0492 0.12 +0.3 575,584 - Shewana3_0492 0.18 -0.1 575,590 + Shewana3_0492 0.19 -0.1 575,592 + Shewana3_0492 0.19 +0.0 575,825 - Shewana3_0492 0.54 +0.4 575,860 - Shewana3_0492 0.59 -0.3 575,860 - Shewana3_0492 0.59 -0.1 575,890 - Shewana3_0492 0.64 -0.2 576,084 + +0.3 576,092 - +0.3 576,274 - -0.0
Or see this region's nucleotide sequence