Experiment: syringaldehyde 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_0468 and uvrD are separated by 171 nucleotides uvrD and ubiA are separated by 125 nucleotides
Shewana3_0468: Shewana3_0468 - putative transcriptional regulator, CadC (RefSeq), at 543,640 to 544,560
_0468
Shewana3_0469: uvrD - DNA-dependent helicase II (RefSeq), at 544,732 to 546,900
uvrD
Shewana3_0470: ubiA - 4-hydroxybenzoate octaprenyltransferase (RefSeq), at 547,026 to 547,886
ubiA
Position (kb) 544
545
546
547 Strain fitness (log2 ratio) -2
-1
0
1 at 543.760 kb on + strand, within Shewana3_0468 at 543.770 kb on - strand, within Shewana3_0468 at 543.812 kb on + strand, within Shewana3_0468 at 543.925 kb on + strand, within Shewana3_0468 at 544.067 kb on + strand, within Shewana3_0468 at 544.091 kb on + strand, within Shewana3_0468 at 544.151 kb on + strand, within Shewana3_0468 at 544.160 kb on + strand, within Shewana3_0468 at 544.170 kb on - strand, within Shewana3_0468 at 544.321 kb on + strand, within Shewana3_0468 at 544.391 kb on - strand, within Shewana3_0468 at 544.396 kb on - strand, within Shewana3_0468 at 544.439 kb on - strand, within Shewana3_0468 at 544.444 kb on - strand, within Shewana3_0468 at 544.487 kb on - strand at 544.678 kb on - strand at 544.800 kb on - strand at 544.865 kb on + strand at 544.953 kb on + strand, within uvrD at 544.989 kb on + strand, within uvrD at 545.014 kb on - strand, within uvrD at 545.042 kb on - strand, within uvrD at 545.393 kb on + strand, within uvrD at 545.401 kb on - strand, within uvrD at 545.458 kb on - strand, within uvrD at 545.900 kb on - strand, within uvrD at 546.153 kb on - strand, within uvrD at 546.192 kb on - strand, within uvrD at 546.331 kb on + strand, within uvrD at 546.364 kb on + strand, within uvrD at 546.381 kb on + strand, within uvrD at 546.396 kb on + strand, within uvrD at 546.452 kb on + strand, within uvrD at 546.543 kb on - strand, within uvrD at 546.929 kb on + strand at 546.929 kb on + strand at 546.937 kb on - strand at 546.937 kb on - strand at 547.888 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction syringaldehyde 1 mM remove 543,760 + Shewana3_0468 0.13 -0.2 543,770 - Shewana3_0468 0.14 -0.6 543,812 + Shewana3_0468 0.19 +0.2 543,925 + Shewana3_0468 0.31 -0.2 544,067 + Shewana3_0468 0.46 +0.1 544,091 + Shewana3_0468 0.49 +0.5 544,151 + Shewana3_0468 0.55 -0.2 544,160 + Shewana3_0468 0.56 +0.0 544,170 - Shewana3_0468 0.58 -0.2 544,321 + Shewana3_0468 0.74 +0.3 544,391 - Shewana3_0468 0.82 -0.1 544,396 - Shewana3_0468 0.82 -0.1 544,439 - Shewana3_0468 0.87 -0.7 544,444 - Shewana3_0468 0.87 -0.1 544,487 - +0.1 544,678 - -0.3 544,800 - -0.6 544,865 + -0.7 544,953 + uvrD Shewana3_0469 0.10 -1.4 544,989 + uvrD Shewana3_0469 0.12 -0.9 545,014 - uvrD Shewana3_0469 0.13 -0.3 545,042 - uvrD Shewana3_0469 0.14 -0.1 545,393 + uvrD Shewana3_0469 0.30 -0.1 545,401 - uvrD Shewana3_0469 0.31 -0.9 545,458 - uvrD Shewana3_0469 0.33 -2.2 545,900 - uvrD Shewana3_0469 0.54 -0.6 546,153 - uvrD Shewana3_0469 0.66 -2.4 546,192 - uvrD Shewana3_0469 0.67 -1.7 546,331 + uvrD Shewana3_0469 0.74 -1.3 546,364 + uvrD Shewana3_0469 0.75 -1.1 546,381 + uvrD Shewana3_0469 0.76 -0.9 546,396 + uvrD Shewana3_0469 0.77 -0.4 546,452 + uvrD Shewana3_0469 0.79 -0.8 546,543 - uvrD Shewana3_0469 0.83 +0.1 546,929 + +0.3 546,929 + +0.1 546,937 - -0.2 546,937 - -2.6 547,888 - +0.2
Or see this region's nucleotide sequence