Experiment: syringaldehyde 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_0444 and Shewana3_0445 are separated by 346 nucleotides Shewana3_0445 and Shewana3_0446 are separated by 3 nucleotides Shewana3_0446 and Shewana3_0447 are separated by 6 nucleotides
Shewana3_0444: Shewana3_0444 - band 7 protein (RefSeq), at 519,799 to 520,686
_0444
Shewana3_0445: Shewana3_0445 - hypothetical protein (RefSeq), at 521,033 to 521,287
_0445
Shewana3_0446: Shewana3_0446 - hypothetical protein (RefSeq), at 521,291 to 521,581
_0446
Shewana3_0447: Shewana3_0447 - response regulator receiver protein (RefSeq), at 521,588 to 523,207
_0447
Position (kb) 521
522 Strain fitness (log2 ratio) -1
0
1 at 520.111 kb on + strand, within Shewana3_0444 at 520.441 kb on + strand, within Shewana3_0444 at 521.000 kb on + strand at 521.159 kb on - strand, within Shewana3_0445 at 521.193 kb on + strand, within Shewana3_0445 at 521.253 kb on - strand, within Shewana3_0445 at 521.343 kb on - strand, within Shewana3_0446 at 521.369 kb on + strand, within Shewana3_0446 at 521.369 kb on + strand, within Shewana3_0446 at 521.375 kb on + strand, within Shewana3_0446 at 521.375 kb on + strand, within Shewana3_0446 at 521.377 kb on - strand, within Shewana3_0446 at 521.438 kb on - strand, within Shewana3_0446 at 521.571 kb on - strand at 521.627 kb on + strand at 521.698 kb on + strand at 521.729 kb on - strand at 521.808 kb on - strand, within Shewana3_0447 at 522.044 kb on + strand, within Shewana3_0447 at 522.090 kb on + strand, within Shewana3_0447 at 522.140 kb on - strand, within Shewana3_0447
Per-strain Table
Position Strand Gene LocusTag Fraction syringaldehyde 1 mM remove 520,111 + Shewana3_0444 0.35 -0.5 520,441 + Shewana3_0444 0.72 -0.0 521,000 + +0.1 521,159 - Shewana3_0445 0.49 -0.8 521,193 + Shewana3_0445 0.63 +0.2 521,253 - Shewana3_0445 0.86 +1.6 521,343 - Shewana3_0446 0.18 -0.5 521,369 + Shewana3_0446 0.27 -0.7 521,369 + Shewana3_0446 0.27 +0.1 521,375 + Shewana3_0446 0.29 +0.1 521,375 + Shewana3_0446 0.29 +0.2 521,377 - Shewana3_0446 0.30 -0.2 521,438 - Shewana3_0446 0.51 -0.5 521,571 - +0.6 521,627 + -0.1 521,698 + +0.1 521,729 - -0.2 521,808 - Shewana3_0447 0.14 +0.3 522,044 + Shewana3_0447 0.28 -0.3 522,090 + Shewana3_0447 0.31 +0.3 522,140 - Shewana3_0447 0.34 -0.6
Or see this region's nucleotide sequence