Experiment: syringaldehyde 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt dapF and Shewana3_0392 overlap by 4 nucleotides Shewana3_0392 and Shewana3_0393 are separated by 48 nucleotides Shewana3_0393 and Shewana3_0394 overlap by 1 nucleotides Shewana3_0394 and Shewana3_0395 are separated by 148 nucleotides
Shewana3_0391: dapF - diaminopimelate epimerase (RefSeq), at 452,040 to 452,867
dapF
Shewana3_0392: Shewana3_0392 - hypothetical protein (RefSeq), at 452,864 to 453,499
_0392
Shewana3_0393: Shewana3_0393 - tyrosine recombinase XerC (RefSeq), at 453,548 to 454,447
_0393
Shewana3_0394: Shewana3_0394 - HAD family hydrolase (RefSeq), at 454,447 to 455,169
_0394
Shewana3_0395: Shewana3_0395 - HupE/UreJ protein (RefSeq), at 455,318 to 455,896
_0395
Position (kb) 453
454
455 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 452.873 kb on - strand at 452.968 kb on + strand, within Shewana3_0392 at 453.232 kb on - strand, within Shewana3_0392 at 453.458 kb on + strand at 453.485 kb on - strand at 453.493 kb on + strand at 453.501 kb on - strand at 453.501 kb on - strand at 453.502 kb on - strand at 453.686 kb on - strand, within Shewana3_0393 at 453.751 kb on - strand, within Shewana3_0393 at 453.860 kb on - strand, within Shewana3_0393 at 453.975 kb on - strand, within Shewana3_0393 at 454.004 kb on + strand, within Shewana3_0393 at 454.012 kb on - strand, within Shewana3_0393 at 454.260 kb on + strand, within Shewana3_0393 at 454.295 kb on + strand, within Shewana3_0393 at 454.408 kb on - strand at 454.408 kb on - strand at 454.659 kb on - strand, within Shewana3_0394 at 454.701 kb on - strand, within Shewana3_0394 at 454.709 kb on + strand, within Shewana3_0394 at 454.755 kb on - strand, within Shewana3_0394 at 454.837 kb on - strand, within Shewana3_0394 at 454.937 kb on - strand, within Shewana3_0394 at 455.110 kb on + strand at 455.217 kb on + strand at 455.218 kb on + strand at 455.331 kb on + strand at 455.420 kb on - strand, within Shewana3_0395 at 455.434 kb on - strand, within Shewana3_0395
Per-strain Table
Position Strand Gene LocusTag Fraction syringaldehyde 1 mM remove 452,873 - -1.6 452,968 + Shewana3_0392 0.16 -0.3 453,232 - Shewana3_0392 0.58 -1.8 453,458 + -0.2 453,485 - -0.5 453,493 + +1.6 453,501 - -3.2 453,501 - -0.0 453,502 - -1.8 453,686 - Shewana3_0393 0.15 -1.0 453,751 - Shewana3_0393 0.23 -2.6 453,860 - Shewana3_0393 0.35 -1.3 453,975 - Shewana3_0393 0.47 -1.9 454,004 + Shewana3_0393 0.51 -1.2 454,012 - Shewana3_0393 0.52 +0.5 454,260 + Shewana3_0393 0.79 +0.5 454,295 + Shewana3_0393 0.83 -2.4 454,408 - -3.3 454,408 - -2.0 454,659 - Shewana3_0394 0.29 -0.3 454,701 - Shewana3_0394 0.35 +0.9 454,709 + Shewana3_0394 0.36 -1.1 454,755 - Shewana3_0394 0.43 -1.2 454,837 - Shewana3_0394 0.54 -2.3 454,937 - Shewana3_0394 0.68 -0.7 455,110 + -1.1 455,217 + -0.2 455,218 + +0.1 455,331 + -0.1 455,420 - Shewana3_0395 0.18 -0.6 455,434 - Shewana3_0395 0.20 -0.5
Or see this region's nucleotide sequence