Experiment: syringaldehyde 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt cyaA and Shewana3_0388 are separated by 39 nucleotides Shewana3_0388 and Shewana3_0389 are separated by 67 nucleotides Shewana3_0389 and Shewana3_0390 are separated by 42 nucleotides
Shewana3_0387: cyaA - adenylate cyclase (RefSeq), at 447,637 to 450,051
cyaA
Shewana3_0388: Shewana3_0388 - frataxin family protein (RefSeq), at 450,091 to 450,420
_0388
Shewana3_0389: Shewana3_0389 - hypothetical protein (RefSeq), at 450,488 to 450,682
_0389
Shewana3_0390: Shewana3_0390 - diaminopimelate decarboxylase (RefSeq), at 450,725 to 451,969
_0390
Position (kb) 450
451 Strain fitness (log2 ratio) -2
-1
0
1 at 449.111 kb on - strand, within cyaA at 449.111 kb on - strand, within cyaA at 449.111 kb on - strand, within cyaA at 449.275 kb on - strand, within cyaA at 449.579 kb on + strand, within cyaA at 449.602 kb on + strand, within cyaA at 449.853 kb on + strand at 449.931 kb on + strand at 449.931 kb on + strand at 449.931 kb on + strand at 449.931 kb on + strand at 450.004 kb on - strand at 450.131 kb on - strand, within Shewana3_0388 at 450.142 kb on + strand, within Shewana3_0388 at 450.568 kb on + strand, within Shewana3_0389 at 450.568 kb on + strand, within Shewana3_0389 at 450.576 kb on - strand, within Shewana3_0389 at 450.589 kb on + strand, within Shewana3_0389 at 450.658 kb on + strand, within Shewana3_0389 at 450.746 kb on + strand at 450.755 kb on - strand at 450.793 kb on + strand at 450.796 kb on + strand at 450.806 kb on + strand at 450.823 kb on - strand at 450.839 kb on + strand at 450.899 kb on + strand, within Shewana3_0390 at 450.940 kb on - strand, within Shewana3_0390 at 450.999 kb on - strand, within Shewana3_0390 at 451.036 kb on + strand, within Shewana3_0390 at 451.123 kb on - strand, within Shewana3_0390 at 451.218 kb on + strand, within Shewana3_0390 at 451.226 kb on - strand, within Shewana3_0390 at 451.226 kb on - strand, within Shewana3_0390 at 451.249 kb on + strand, within Shewana3_0390 at 451.273 kb on - strand, within Shewana3_0390 at 451.300 kb on + strand, within Shewana3_0390 at 451.326 kb on + strand, within Shewana3_0390 at 451.326 kb on + strand, within Shewana3_0390 at 451.326 kb on + strand, within Shewana3_0390
Per-strain Table
Position Strand Gene LocusTag Fraction syringaldehyde 1 mM remove 449,111 - cyaA Shewana3_0387 0.61 -1.8 449,111 - cyaA Shewana3_0387 0.61 -0.3 449,111 - cyaA Shewana3_0387 0.61 -0.1 449,275 - cyaA Shewana3_0387 0.68 -1.0 449,579 + cyaA Shewana3_0387 0.80 -0.0 449,602 + cyaA Shewana3_0387 0.81 +0.0 449,853 + -0.2 449,931 + -0.2 449,931 + +0.1 449,931 + -0.1 449,931 + +0.5 450,004 - -0.0 450,131 - Shewana3_0388 0.12 -1.3 450,142 + Shewana3_0388 0.15 -1.9 450,568 + Shewana3_0389 0.41 -1.3 450,568 + Shewana3_0389 0.41 +0.5 450,576 - Shewana3_0389 0.45 -0.8 450,589 + Shewana3_0389 0.52 +0.0 450,658 + Shewana3_0389 0.87 -0.3 450,746 + +0.0 450,755 - -0.4 450,793 + -0.3 450,796 + +0.2 450,806 + +0.0 450,823 - +0.9 450,839 + +0.2 450,899 + Shewana3_0390 0.14 +0.2 450,940 - Shewana3_0390 0.17 -0.3 450,999 - Shewana3_0390 0.22 -0.2 451,036 + Shewana3_0390 0.25 -0.3 451,123 - Shewana3_0390 0.32 +0.1 451,218 + Shewana3_0390 0.40 -0.5 451,226 - Shewana3_0390 0.40 +0.4 451,226 - Shewana3_0390 0.40 -1.8 451,249 + Shewana3_0390 0.42 +0.4 451,273 - Shewana3_0390 0.44 -1.0 451,300 + Shewana3_0390 0.46 +1.6 451,326 + Shewana3_0390 0.48 -0.3 451,326 + Shewana3_0390 0.48 +0.5 451,326 + Shewana3_0390 0.48 +0.4
Or see this region's nucleotide sequence