Experiment: syringaldehyde 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_0350 and Shewana3_0351 are separated by 151 nucleotides Shewana3_0351 and Shewana3_0352 overlap by 38 nucleotides Shewana3_0352 and Shewana3_0353 are separated by 172 nucleotides
Shewana3_0350: Shewana3_0350 - diguanylate cyclase (RefSeq), at 384,315 to 386,132
_0350
Shewana3_0351: Shewana3_0351 - hypothetical protein (RefSeq), at 386,284 to 386,697
_0351
Shewana3_0352: Shewana3_0352 - amino acid ABC transporter periplasmic protein (RefSeq), at 386,660 to 387,499
_0352
Shewana3_0353: Shewana3_0353 - hypothetical protein (RefSeq), at 387,672 to 388,988
_0353
Position (kb) 386
387
388 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 385.775 kb on + strand, within Shewana3_0350 at 385.783 kb on - strand, within Shewana3_0350 at 385.831 kb on - strand, within Shewana3_0350 at 385.831 kb on - strand, within Shewana3_0350 at 385.841 kb on + strand, within Shewana3_0350 at 385.895 kb on + strand, within Shewana3_0350 at 385.903 kb on - strand, within Shewana3_0350 at 385.924 kb on - strand, within Shewana3_0350 at 386.041 kb on + strand at 386.050 kb on + strand at 386.050 kb on + strand at 386.059 kb on - strand at 386.113 kb on - strand at 386.118 kb on - strand at 386.276 kb on + strand at 386.284 kb on - strand at 386.368 kb on + strand, within Shewana3_0351 at 386.373 kb on + strand, within Shewana3_0351 at 386.436 kb on - strand, within Shewana3_0351 at 386.624 kb on + strand, within Shewana3_0351 at 386.624 kb on + strand, within Shewana3_0351 at 386.759 kb on - strand, within Shewana3_0352 at 386.830 kb on + strand, within Shewana3_0352 at 386.887 kb on + strand, within Shewana3_0352 at 386.895 kb on - strand, within Shewana3_0352 at 386.895 kb on - strand, within Shewana3_0352 at 386.895 kb on - strand, within Shewana3_0352 at 387.045 kb on + strand, within Shewana3_0352 at 387.169 kb on - strand, within Shewana3_0352 at 387.242 kb on + strand, within Shewana3_0352 at 387.260 kb on - strand, within Shewana3_0352 at 387.286 kb on + strand, within Shewana3_0352 at 387.286 kb on + strand, within Shewana3_0352 at 387.286 kb on + strand, within Shewana3_0352 at 387.286 kb on + strand, within Shewana3_0352 at 387.294 kb on - strand, within Shewana3_0352 at 387.294 kb on - strand, within Shewana3_0352 at 387.408 kb on - strand, within Shewana3_0352 at 387.427 kb on - strand at 387.467 kb on - strand at 387.472 kb on - strand at 387.803 kb on - strand at 387.958 kb on + strand, within Shewana3_0353 at 387.958 kb on + strand, within Shewana3_0353 at 387.958 kb on + strand, within Shewana3_0353 at 387.966 kb on - strand, within Shewana3_0353 at 387.966 kb on - strand, within Shewana3_0353 at 387.966 kb on - strand, within Shewana3_0353 at 388.177 kb on + strand, within Shewana3_0353 at 388.177 kb on + strand, within Shewana3_0353 at 388.177 kb on + strand, within Shewana3_0353 at 388.246 kb on - strand, within Shewana3_0353 at 388.457 kb on - strand, within Shewana3_0353 at 388.457 kb on - strand, within Shewana3_0353
Per-strain Table
Position Strand Gene LocusTag Fraction syringaldehyde 1 mM remove 385,775 + Shewana3_0350 0.80 -0.1 385,783 - Shewana3_0350 0.81 -0.2 385,831 - Shewana3_0350 0.83 -3.0 385,831 - Shewana3_0350 0.83 -0.6 385,841 + Shewana3_0350 0.84 +0.0 385,895 + Shewana3_0350 0.87 -0.2 385,903 - Shewana3_0350 0.87 +0.4 385,924 - Shewana3_0350 0.89 -0.2 386,041 + -1.2 386,050 + -0.3 386,050 + -0.0 386,059 - +0.9 386,113 - -0.1 386,118 - -0.1 386,276 + +0.5 386,284 - +0.2 386,368 + Shewana3_0351 0.20 -0.8 386,373 + Shewana3_0351 0.21 -0.9 386,436 - Shewana3_0351 0.37 -0.4 386,624 + Shewana3_0351 0.82 +0.1 386,624 + Shewana3_0351 0.82 +0.3 386,759 - Shewana3_0352 0.12 -0.0 386,830 + Shewana3_0352 0.20 +0.2 386,887 + Shewana3_0352 0.27 +0.1 386,895 - Shewana3_0352 0.28 -0.4 386,895 - Shewana3_0352 0.28 +0.2 386,895 - Shewana3_0352 0.28 -0.7 387,045 + Shewana3_0352 0.46 -0.2 387,169 - Shewana3_0352 0.61 +0.2 387,242 + Shewana3_0352 0.69 -0.5 387,260 - Shewana3_0352 0.71 -0.8 387,286 + Shewana3_0352 0.75 -0.1 387,286 + Shewana3_0352 0.75 -0.0 387,286 + Shewana3_0352 0.75 -0.5 387,286 + Shewana3_0352 0.75 -1.5 387,294 - Shewana3_0352 0.75 +0.3 387,294 - Shewana3_0352 0.75 -0.1 387,408 - Shewana3_0352 0.89 -0.3 387,427 - -0.3 387,467 - -0.9 387,472 - -0.6 387,803 - -0.2 387,958 + Shewana3_0353 0.22 -0.7 387,958 + Shewana3_0353 0.22 -0.6 387,958 + Shewana3_0353 0.22 -0.2 387,966 - Shewana3_0353 0.22 -0.5 387,966 - Shewana3_0353 0.22 -0.2 387,966 - Shewana3_0353 0.22 -0.9 388,177 + Shewana3_0353 0.38 -0.0 388,177 + Shewana3_0353 0.38 -0.4 388,177 + Shewana3_0353 0.38 -0.1 388,246 - Shewana3_0353 0.44 +0.2 388,457 - Shewana3_0353 0.60 +1.9 388,457 - Shewana3_0353 0.60 -0.0
Or see this region's nucleotide sequence