Experiment: syringaldehyde 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_0295 and Shewana3_0296 are separated by 135 nucleotides Shewana3_0296 and Shewana3_0297 are separated by 184 nucleotides
Shewana3_0295: Shewana3_0295 - aminotransferase, class V (RefSeq), at 328,100 to 329,221
_0295
Shewana3_0296: Shewana3_0296 - hypothetical protein (RefSeq), at 329,357 to 329,680
_0296
Shewana3_0297: Shewana3_0297 - sodium:dicarboxylate symporter (RefSeq), at 329,865 to 331,109
_0297
Position (kb) 329
330 Strain fitness (log2 ratio) -1
0
1 at 328.605 kb on + strand, within Shewana3_0295 at 328.747 kb on - strand, within Shewana3_0295 at 328.747 kb on - strand, within Shewana3_0295 at 328.749 kb on - strand, within Shewana3_0295 at 328.786 kb on + strand, within Shewana3_0295 at 328.807 kb on - strand, within Shewana3_0295 at 328.892 kb on - strand, within Shewana3_0295 at 328.928 kb on + strand, within Shewana3_0295 at 329.136 kb on + strand at 329.172 kb on - strand at 329.200 kb on + strand at 329.241 kb on - strand at 329.404 kb on + strand, within Shewana3_0296 at 329.404 kb on + strand, within Shewana3_0296 at 329.404 kb on + strand, within Shewana3_0296 at 329.665 kb on + strand at 329.670 kb on + strand at 329.724 kb on - strand at 329.787 kb on + strand at 329.884 kb on + strand at 330.003 kb on + strand, within Shewana3_0297 at 330.003 kb on + strand, within Shewana3_0297 at 330.003 kb on + strand, within Shewana3_0297 at 330.003 kb on + strand, within Shewana3_0297 at 330.011 kb on - strand, within Shewana3_0297 at 330.043 kb on - strand, within Shewana3_0297 at 330.071 kb on - strand, within Shewana3_0297 at 330.077 kb on + strand, within Shewana3_0297 at 330.077 kb on + strand, within Shewana3_0297 at 330.085 kb on - strand, within Shewana3_0297 at 330.085 kb on - strand, within Shewana3_0297 at 330.134 kb on - strand, within Shewana3_0297 at 330.161 kb on - strand, within Shewana3_0297 at 330.262 kb on - strand, within Shewana3_0297 at 330.566 kb on - strand, within Shewana3_0297
Per-strain Table
Position Strand Gene LocusTag Fraction syringaldehyde 1 mM remove 328,605 + Shewana3_0295 0.45 -0.3 328,747 - Shewana3_0295 0.58 -0.2 328,747 - Shewana3_0295 0.58 -1.2 328,749 - Shewana3_0295 0.58 +0.1 328,786 + Shewana3_0295 0.61 -0.6 328,807 - Shewana3_0295 0.63 +0.1 328,892 - Shewana3_0295 0.71 +0.0 328,928 + Shewana3_0295 0.74 -0.4 329,136 + -1.1 329,172 - -0.1 329,200 + -0.5 329,241 - -0.1 329,404 + Shewana3_0296 0.15 -0.1 329,404 + Shewana3_0296 0.15 -0.6 329,404 + Shewana3_0296 0.15 -0.6 329,665 + -0.5 329,670 + -0.0 329,724 - +0.4 329,787 + -0.3 329,884 + +0.3 330,003 + Shewana3_0297 0.11 +0.0 330,003 + Shewana3_0297 0.11 +0.5 330,003 + Shewana3_0297 0.11 +0.2 330,003 + Shewana3_0297 0.11 +0.1 330,011 - Shewana3_0297 0.12 +0.2 330,043 - Shewana3_0297 0.14 -0.2 330,071 - Shewana3_0297 0.17 +0.0 330,077 + Shewana3_0297 0.17 +0.0 330,077 + Shewana3_0297 0.17 -0.3 330,085 - Shewana3_0297 0.18 -0.4 330,085 - Shewana3_0297 0.18 +0.0 330,134 - Shewana3_0297 0.22 -0.1 330,161 - Shewana3_0297 0.24 -0.5 330,262 - Shewana3_0297 0.32 -0.1 330,566 - Shewana3_0297 0.56 +0.0
Or see this region's nucleotide sequence