Experiment: syringaldehyde 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_0283 and Shewana3_0284 are separated by 32 nucleotides Shewana3_0284 and Shewana3_0285 are separated by 119 nucleotides Shewana3_0285 and Shewana3_0286 are separated by 70 nucleotides
Shewana3_0283: Shewana3_0283 - ATPase domain-containing protein (RefSeq), at 316,368 to 317,603
_0283
Shewana3_0284: Shewana3_0284 - pseudouridine synthase Rlu family protein (RefSeq), at 317,636 to 318,325
_0284
Shewana3_0285: Shewana3_0285 - hypothetical protein (RefSeq), at 318,445 to 318,612
_0285
Shewana3_0286: Shewana3_0286 - TonB-dependent receptor (RefSeq), at 318,683 to 320,854
_0286
Position (kb) 318
319 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 317.510 kb on - strand at 317.578 kb on + strand at 317.630 kb on - strand at 317.696 kb on + strand at 317.793 kb on + strand, within Shewana3_0284 at 317.793 kb on + strand, within Shewana3_0284 at 317.793 kb on + strand, within Shewana3_0284 at 317.793 kb on + strand, within Shewana3_0284 at 317.801 kb on - strand, within Shewana3_0284 at 317.801 kb on - strand, within Shewana3_0284 at 317.801 kb on - strand, within Shewana3_0284 at 317.859 kb on + strand, within Shewana3_0284 at 317.917 kb on + strand, within Shewana3_0284 at 318.015 kb on + strand, within Shewana3_0284 at 318.093 kb on + strand, within Shewana3_0284 at 318.129 kb on + strand, within Shewana3_0284 at 318.137 kb on - strand, within Shewana3_0284 at 318.236 kb on - strand, within Shewana3_0284 at 318.246 kb on - strand, within Shewana3_0284 at 318.294 kb on - strand at 318.523 kb on + strand, within Shewana3_0285 at 318.587 kb on + strand, within Shewana3_0285 at 318.587 kb on + strand, within Shewana3_0285 at 318.587 kb on + strand, within Shewana3_0285 at 318.691 kb on + strand at 318.817 kb on - strand at 318.830 kb on - strand at 318.886 kb on + strand at 318.966 kb on + strand, within Shewana3_0286 at 319.081 kb on + strand, within Shewana3_0286 at 319.094 kb on + strand, within Shewana3_0286 at 319.172 kb on + strand, within Shewana3_0286 at 319.180 kb on - strand, within Shewana3_0286 at 319.447 kb on - strand, within Shewana3_0286 at 319.502 kb on - strand, within Shewana3_0286 at 319.526 kb on - strand, within Shewana3_0286
Per-strain Table
Position Strand Gene LocusTag Fraction syringaldehyde 1 mM remove 317,510 - -0.6 317,578 + +0.6 317,630 - -0.7 317,696 + -0.2 317,793 + Shewana3_0284 0.23 -0.5 317,793 + Shewana3_0284 0.23 +0.3 317,793 + Shewana3_0284 0.23 +0.3 317,793 + Shewana3_0284 0.23 +0.0 317,801 - Shewana3_0284 0.24 -1.1 317,801 - Shewana3_0284 0.24 -0.6 317,801 - Shewana3_0284 0.24 +2.6 317,859 + Shewana3_0284 0.32 -0.5 317,917 + Shewana3_0284 0.41 +0.4 318,015 + Shewana3_0284 0.55 -0.2 318,093 + Shewana3_0284 0.66 -0.0 318,129 + Shewana3_0284 0.71 +0.2 318,137 - Shewana3_0284 0.73 -0.4 318,236 - Shewana3_0284 0.87 +0.2 318,246 - Shewana3_0284 0.88 +0.2 318,294 - -0.5 318,523 + Shewana3_0285 0.46 +1.7 318,587 + Shewana3_0285 0.85 +0.1 318,587 + Shewana3_0285 0.85 +0.5 318,587 + Shewana3_0285 0.85 -0.0 318,691 + -2.9 318,817 - -0.2 318,830 - -0.1 318,886 + -0.7 318,966 + Shewana3_0286 0.13 -0.4 319,081 + Shewana3_0286 0.18 +0.6 319,094 + Shewana3_0286 0.19 -1.3 319,172 + Shewana3_0286 0.23 +0.1 319,180 - Shewana3_0286 0.23 +0.3 319,447 - Shewana3_0286 0.35 -0.5 319,502 - Shewana3_0286 0.38 -0.1 319,526 - Shewana3_0286 0.39 -0.1
Or see this region's nucleotide sequence