Experiment: syringaldehyde 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_0258 and Shewana3_0259 are separated by 43 nucleotides Shewana3_0259 and Shewana3_0260 are separated by 121 nucleotides Shewana3_0260 and Shewana3_0261 are separated by 274 nucleotides
Shewana3_0258: Shewana3_0258 - nitrogen metabolism transcriptional regulator, NtrC, Fis family (RefSeq), at 289,031 to 290,440
_0258
Shewana3_0259: Shewana3_0259 - signal transduction histidine kinase, nitrogen specific, NtrB (RefSeq), at 290,484 to 291,530
_0259
Shewana3_0260: Shewana3_0260 - hypothetical protein (RefSeq), at 291,652 to 292,185
_0260
Shewana3_0261: Shewana3_0261 - iron-containing alcohol dehydrogenase (RefSeq), at 292,460 to 293,617
_0261
Position (kb) 290
291
292 Strain fitness (log2 ratio) -2
-1
0
1 at 290.074 kb on - strand, within Shewana3_0258 at 290.091 kb on - strand, within Shewana3_0258 at 290.131 kb on - strand, within Shewana3_0258 at 290.170 kb on + strand, within Shewana3_0258 at 290.188 kb on - strand, within Shewana3_0258 at 290.188 kb on - strand, within Shewana3_0258 at 290.188 kb on - strand, within Shewana3_0258 at 290.188 kb on - strand, within Shewana3_0258 at 290.199 kb on + strand, within Shewana3_0258 at 290.251 kb on + strand, within Shewana3_0258 at 290.251 kb on + strand, within Shewana3_0258 at 290.251 kb on + strand, within Shewana3_0258 at 290.251 kb on + strand, within Shewana3_0258 at 290.251 kb on + strand, within Shewana3_0258 at 290.259 kb on - strand, within Shewana3_0258 at 290.259 kb on - strand, within Shewana3_0258 at 290.297 kb on - strand, within Shewana3_0258 at 290.357 kb on + strand at 290.528 kb on + strand at 290.536 kb on - strand at 290.597 kb on - strand, within Shewana3_0259 at 290.626 kb on + strand, within Shewana3_0259 at 290.632 kb on + strand, within Shewana3_0259 at 290.640 kb on - strand, within Shewana3_0259 at 290.640 kb on - strand, within Shewana3_0259 at 290.640 kb on - strand, within Shewana3_0259 at 290.675 kb on - strand, within Shewana3_0259 at 290.694 kb on + strand, within Shewana3_0259 at 290.699 kb on + strand, within Shewana3_0259 at 290.707 kb on - strand, within Shewana3_0259 at 290.707 kb on - strand, within Shewana3_0259 at 290.707 kb on - strand, within Shewana3_0259 at 290.778 kb on + strand, within Shewana3_0259 at 290.785 kb on - strand, within Shewana3_0259 at 290.947 kb on - strand, within Shewana3_0259 at 291.083 kb on + strand, within Shewana3_0259 at 291.091 kb on - strand, within Shewana3_0259 at 291.236 kb on - strand, within Shewana3_0259 at 291.236 kb on - strand, within Shewana3_0259 at 291.324 kb on + strand, within Shewana3_0259 at 291.557 kb on + strand at 291.557 kb on + strand at 291.606 kb on + strand at 291.606 kb on + strand at 291.778 kb on - strand, within Shewana3_0260 at 291.801 kb on + strand, within Shewana3_0260 at 291.822 kb on - strand, within Shewana3_0260 at 291.926 kb on + strand, within Shewana3_0260 at 292.082 kb on - strand, within Shewana3_0260 at 292.173 kb on - strand at 292.178 kb on - strand at 292.281 kb on - strand at 292.381 kb on - strand at 292.414 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction syringaldehyde 1 mM remove 290,074 - Shewana3_0258 0.74 +0.6 290,091 - Shewana3_0258 0.75 +1.0 290,131 - Shewana3_0258 0.78 +1.3 290,170 + Shewana3_0258 0.81 +0.9 290,188 - Shewana3_0258 0.82 +0.8 290,188 - Shewana3_0258 0.82 +1.0 290,188 - Shewana3_0258 0.82 +0.9 290,188 - Shewana3_0258 0.82 +0.6 290,199 + Shewana3_0258 0.83 +0.9 290,251 + Shewana3_0258 0.87 +0.5 290,251 + Shewana3_0258 0.87 +0.9 290,251 + Shewana3_0258 0.87 +1.1 290,251 + Shewana3_0258 0.87 +1.1 290,251 + Shewana3_0258 0.87 +0.8 290,259 - Shewana3_0258 0.87 +0.4 290,259 - Shewana3_0258 0.87 +0.1 290,297 - Shewana3_0258 0.90 +1.1 290,357 + +0.9 290,528 + +1.1 290,536 - +1.5 290,597 - Shewana3_0259 0.11 +0.9 290,626 + Shewana3_0259 0.14 +0.9 290,632 + Shewana3_0259 0.14 +0.9 290,640 - Shewana3_0259 0.15 +0.7 290,640 - Shewana3_0259 0.15 +0.8 290,640 - Shewana3_0259 0.15 +0.9 290,675 - Shewana3_0259 0.18 +0.6 290,694 + Shewana3_0259 0.20 +1.0 290,699 + Shewana3_0259 0.21 +0.5 290,707 - Shewana3_0259 0.21 +1.2 290,707 - Shewana3_0259 0.21 +0.7 290,707 - Shewana3_0259 0.21 +0.6 290,778 + Shewana3_0259 0.28 +1.1 290,785 - Shewana3_0259 0.29 +1.1 290,947 - Shewana3_0259 0.44 +0.1 291,083 + Shewana3_0259 0.57 +1.3 291,091 - Shewana3_0259 0.58 +0.7 291,236 - Shewana3_0259 0.72 +1.4 291,236 - Shewana3_0259 0.72 +0.2 291,324 + Shewana3_0259 0.80 +0.7 291,557 + +0.1 291,557 + +0.2 291,606 + +0.8 291,606 + -0.2 291,778 - Shewana3_0260 0.24 +0.0 291,801 + Shewana3_0260 0.28 -0.2 291,822 - Shewana3_0260 0.32 +0.0 291,926 + Shewana3_0260 0.51 -0.2 292,082 - Shewana3_0260 0.81 -1.4 292,173 - -1.5 292,178 - -2.6 292,281 - -0.1 292,381 - +1.6 292,414 - -1.0
Or see this region's nucleotide sequence