Experiment: syringaldehyde 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_0240 and Shewana3_0241 are separated by 2 nucleotides Shewana3_0241 and Shewana3_0242 overlap by 1 nucleotides Shewana3_0242 and Shewana3_0243 overlap by 8 nucleotides Shewana3_0243 and Shewana3_0244 are separated by 47 nucleotides
Shewana3_0240: Shewana3_0240 - ATPase domain-containing protein (RefSeq), at 273,224 to 274,540
_0240
Shewana3_0241: Shewana3_0241 - two component transcriptional regulator (RefSeq), at 274,543 to 275,205
_0241
Shewana3_0242: Shewana3_0242 - peptidase (RefSeq), at 275,205 to 275,471
_0242
Shewana3_0243: Shewana3_0243 - diheme cytochrome c (RefSeq), at 275,464 to 276,027
_0243
Shewana3_0244: Shewana3_0244 - cytochrome c-type protein Shp (RefSeq), at 276,075 to 276,509
_0244
Position (kb) 275
276 Strain fitness (log2 ratio) -2
-1
0
1 at 274.493 kb on - strand at 274.783 kb on - strand, within Shewana3_0241 at 274.804 kb on + strand, within Shewana3_0241 at 274.843 kb on + strand, within Shewana3_0241 at 275.022 kb on - strand, within Shewana3_0241 at 275.161 kb on - strand at 275.377 kb on - strand, within Shewana3_0242 at 275.377 kb on - strand, within Shewana3_0242 at 275.377 kb on - strand, within Shewana3_0242 at 275.392 kb on + strand, within Shewana3_0242 at 275.454 kb on + strand at 275.540 kb on - strand, within Shewana3_0243 at 275.814 kb on - strand, within Shewana3_0243 at 275.846 kb on - strand, within Shewana3_0243 at 275.990 kb on - strand at 276.095 kb on + strand at 276.158 kb on - strand, within Shewana3_0244 at 276.186 kb on + strand, within Shewana3_0244 at 276.308 kb on + strand, within Shewana3_0244 at 276.377 kb on + strand, within Shewana3_0244 at 276.417 kb on + strand, within Shewana3_0244 at 276.440 kb on + strand, within Shewana3_0244 at 276.461 kb on - strand, within Shewana3_0244 at 276.461 kb on - strand, within Shewana3_0244 at 276.466 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction syringaldehyde 1 mM remove 274,493 - -1.0 274,783 - Shewana3_0241 0.36 -1.4 274,804 + Shewana3_0241 0.39 +0.4 274,843 + Shewana3_0241 0.45 -0.0 275,022 - Shewana3_0241 0.72 -0.2 275,161 - -0.3 275,377 - Shewana3_0242 0.64 -1.9 275,377 - Shewana3_0242 0.64 -2.2 275,377 - Shewana3_0242 0.64 -1.8 275,392 + Shewana3_0242 0.70 -0.1 275,454 + +0.3 275,540 - Shewana3_0243 0.13 -0.1 275,814 - Shewana3_0243 0.62 -0.4 275,846 - Shewana3_0243 0.68 -0.2 275,990 - -0.5 276,095 + -0.2 276,158 - Shewana3_0244 0.19 +0.0 276,186 + Shewana3_0244 0.26 -0.8 276,308 + Shewana3_0244 0.54 +0.0 276,377 + Shewana3_0244 0.69 -0.3 276,417 + Shewana3_0244 0.79 -0.1 276,440 + Shewana3_0244 0.84 -0.0 276,461 - Shewana3_0244 0.89 -0.1 276,461 - Shewana3_0244 0.89 -0.4 276,466 - +0.0
Or see this region's nucleotide sequence