Experiment: syringaldehyde 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_0227 and Shewana3_0228 overlap by 4 nucleotides Shewana3_0228 and Shewana3_0229 overlap by 1 nucleotides Shewana3_0229 and Shewana3_0230 are separated by 1 nucleotides Shewana3_0230 and Shewana3_0231 are separated by 11 nucleotides Shewana3_0231 and Shewana3_0232 are separated by 325 nucleotides
Shewana3_0227: Shewana3_0227 - cytochrome c-type biogenesis protein CcmE (RefSeq), at 258,101 to 258,586
_0227
Shewana3_0228: Shewana3_0228 - Heme exporter protein D (CcmD) (RefSeq), at 258,583 to 258,783
_0228
Shewana3_0229: Shewana3_0229 - heme exporter protein CcmC (RefSeq), at 258,783 to 259,529
_0229
Shewana3_0230: Shewana3_0230 - heme exporter protein CcmB (RefSeq), at 259,531 to 260,217
_0230
Shewana3_0231: Shewana3_0231 - cytochrome c biogenesis protein CcmA (RefSeq), at 260,229 to 260,879
_0231
Shewana3_0232: Shewana3_0232 - cytochrome c, class I (RefSeq), at 261,205 to 261,504
_0232
Position (kb) 259
260
261 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 258.654 kb on - strand, within Shewana3_0228 at 258.737 kb on - strand, within Shewana3_0228 at 258.807 kb on - strand at 259.003 kb on - strand, within Shewana3_0229 at 259.198 kb on + strand, within Shewana3_0229 at 259.512 kb on - strand at 259.572 kb on + strand at 259.734 kb on + strand, within Shewana3_0230 at 259.742 kb on + strand, within Shewana3_0230 at 259.789 kb on - strand, within Shewana3_0230 at 259.799 kb on + strand, within Shewana3_0230 at 259.932 kb on + strand, within Shewana3_0230 at 259.937 kb on + strand, within Shewana3_0230 at 259.940 kb on - strand, within Shewana3_0230 at 260.172 kb on + strand at 260.201 kb on - strand at 260.226 kb on + strand at 260.234 kb on - strand at 260.307 kb on - strand, within Shewana3_0231 at 260.451 kb on + strand, within Shewana3_0231 at 260.537 kb on + strand, within Shewana3_0231 at 260.593 kb on + strand, within Shewana3_0231 at 260.696 kb on + strand, within Shewana3_0231 at 260.697 kb on - strand, within Shewana3_0231 at 260.697 kb on - strand, within Shewana3_0231 at 260.700 kb on + strand, within Shewana3_0231 at 260.704 kb on - strand, within Shewana3_0231 at 260.708 kb on - strand, within Shewana3_0231 at 260.708 kb on - strand, within Shewana3_0231 at 260.835 kb on - strand at 260.846 kb on + strand at 260.955 kb on - strand at 260.955 kb on - strand at 260.993 kb on + strand at 261.129 kb on + strand at 261.130 kb on + strand at 261.147 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction syringaldehyde 1 mM remove 258,654 - Shewana3_0228 0.35 -0.4 258,737 - Shewana3_0228 0.77 -0.6 258,807 - -0.2 259,003 - Shewana3_0229 0.29 -1.0 259,198 + Shewana3_0229 0.56 -1.5 259,512 - -2.3 259,572 + -1.2 259,734 + Shewana3_0230 0.30 -0.9 259,742 + Shewana3_0230 0.31 -2.4 259,789 - Shewana3_0230 0.38 -0.4 259,799 + Shewana3_0230 0.39 -0.7 259,932 + Shewana3_0230 0.58 -1.0 259,937 + Shewana3_0230 0.59 -1.4 259,940 - Shewana3_0230 0.60 -2.3 260,172 + -0.4 260,201 - -0.1 260,226 + -2.6 260,234 - +0.5 260,307 - Shewana3_0231 0.12 -1.0 260,451 + Shewana3_0231 0.34 -1.8 260,537 + Shewana3_0231 0.47 -2.4 260,593 + Shewana3_0231 0.56 -2.2 260,696 + Shewana3_0231 0.72 -1.2 260,697 - Shewana3_0231 0.72 -1.2 260,697 - Shewana3_0231 0.72 -1.8 260,700 + Shewana3_0231 0.72 -1.5 260,704 - Shewana3_0231 0.73 -3.0 260,708 - Shewana3_0231 0.74 -1.9 260,708 - Shewana3_0231 0.74 -1.7 260,835 - -1.0 260,846 + -1.4 260,955 - -0.1 260,955 - +0.1 260,993 + +0.1 261,129 + -0.6 261,130 + -0.0 261,147 - -0.1
Or see this region's nucleotide sequence