Experiment: syringaldehyde 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_0127 and Shewana3_0128 are separated by 41 nucleotides Shewana3_0128 and Shewana3_0129 are separated by 25 nucleotides Shewana3_0129 and Shewana3_0130 are separated by 54 nucleotides Shewana3_0130 and Shewana3_0131 are separated by 11 nucleotides
Shewana3_0127: Shewana3_0127 - putative SAM-dependent methyltransferase (RefSeq), at 143,323 to 144,417
_0127
Shewana3_0128: Shewana3_0128 - hypothetical protein (RefSeq), at 144,459 to 144,755
_0128
Shewana3_0129: Shewana3_0129 - response regulator receiver protein (RefSeq), at 144,781 to 145,443
_0129
Shewana3_0130: Shewana3_0130 - molybdopterin biosynthesis protein MoeB (RefSeq), at 145,498 to 146,259
_0130
Shewana3_0131: Shewana3_0131 - molybdopterin molybdochelatase (RefSeq), at 146,271 to 147,605
_0131
Position (kb) 144
145
146 Strain fitness (log2 ratio) -1
0
1
2 at 143.818 kb on + strand, within Shewana3_0127 at 143.862 kb on + strand, within Shewana3_0127 at 143.887 kb on + strand, within Shewana3_0127 at 143.977 kb on + strand, within Shewana3_0127 at 144.017 kb on - strand, within Shewana3_0127 at 144.107 kb on - strand, within Shewana3_0127 at 144.107 kb on - strand, within Shewana3_0127 at 144.126 kb on - strand, within Shewana3_0127 at 144.200 kb on + strand, within Shewana3_0127 at 144.380 kb on - strand at 144.380 kb on - strand at 144.486 kb on - strand at 144.821 kb on - strand at 144.903 kb on - strand, within Shewana3_0129 at 144.903 kb on - strand, within Shewana3_0129 at 145.275 kb on + strand, within Shewana3_0129 at 145.288 kb on - strand, within Shewana3_0129 at 145.348 kb on + strand, within Shewana3_0129 at 145.351 kb on - strand, within Shewana3_0129 at 145.353 kb on + strand, within Shewana3_0129 at 145.353 kb on + strand, within Shewana3_0129 at 145.362 kb on - strand, within Shewana3_0129 at 145.399 kb on + strand at 145.399 kb on + strand at 145.414 kb on - strand at 145.488 kb on - strand at 145.488 kb on - strand at 145.522 kb on + strand at 145.535 kb on - strand at 145.688 kb on - strand, within Shewana3_0130 at 145.793 kb on + strand, within Shewana3_0130 at 145.815 kb on + strand, within Shewana3_0130 at 146.119 kb on + strand, within Shewana3_0130 at 146.127 kb on - strand, within Shewana3_0130 at 146.269 kb on + strand at 146.269 kb on + strand at 146.277 kb on - strand at 146.277 kb on - strand at 146.437 kb on - strand, within Shewana3_0131
Per-strain Table
Position Strand Gene LocusTag Fraction syringaldehyde 1 mM remove 143,818 + Shewana3_0127 0.45 +0.2 143,862 + Shewana3_0127 0.49 +0.0 143,887 + Shewana3_0127 0.52 +0.3 143,977 + Shewana3_0127 0.60 +0.0 144,017 - Shewana3_0127 0.63 -0.2 144,107 - Shewana3_0127 0.72 +0.3 144,107 - Shewana3_0127 0.72 -0.4 144,126 - Shewana3_0127 0.73 +0.1 144,200 + Shewana3_0127 0.80 -0.0 144,380 - -0.5 144,380 - +0.1 144,486 - +0.0 144,821 - -0.2 144,903 - Shewana3_0129 0.18 +0.3 144,903 - Shewana3_0129 0.18 +0.5 145,275 + Shewana3_0129 0.75 -0.5 145,288 - Shewana3_0129 0.76 +0.2 145,348 + Shewana3_0129 0.86 -1.3 145,351 - Shewana3_0129 0.86 +0.1 145,353 + Shewana3_0129 0.86 -0.0 145,353 + Shewana3_0129 0.86 -0.5 145,362 - Shewana3_0129 0.88 -0.5 145,399 + -0.6 145,399 + -1.1 145,414 - +0.1 145,488 - +2.1 145,488 - +0.1 145,522 + +0.4 145,535 - -0.5 145,688 - Shewana3_0130 0.25 -0.0 145,793 + Shewana3_0130 0.39 -0.4 145,815 + Shewana3_0130 0.42 +0.8 146,119 + Shewana3_0130 0.81 -0.5 146,127 - Shewana3_0130 0.83 -0.6 146,269 + +0.2 146,269 + -0.6 146,277 - -1.3 146,277 - -0.1 146,437 - Shewana3_0131 0.12 -0.6
Or see this region's nucleotide sequence