Experiment: syringaldehyde 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_0039 and Shewana3_0040 are separated by 129 nucleotides Shewana3_0040 and Shewana3_0041 are separated by 29 nucleotides Shewana3_0041 and Shewana3_0042 are separated by 30 nucleotides Shewana3_0042 and aroE are separated by 170 nucleotides
Shewana3_0039: Shewana3_0039 - DNA topoisomerase type IA Zn finger domain-containing protein (RefSeq), at 45,802 to 46,365
_0039
Shewana3_0040: Shewana3_0040 - translation factor SUA5 (RefSeq), at 46,495 to 47,061
_0040
Shewana3_0041: Shewana3_0041 - coproporphyrinogen III oxidase (RefSeq), at 47,091 to 47,999
_0041
Shewana3_0042: Shewana3_0042 - globin (RefSeq), at 48,030 to 48,467
_0042
Shewana3_0043: aroE - shikimate 5-dehydrogenase (RefSeq), at 48,638 to 49,516
aroE
Position (kb) 47
48 Strain fitness (log2 ratio) -2
-1
0
1 at 46.106 kb on + strand, within Shewana3_0039 at 46.122 kb on + strand, within Shewana3_0039 at 46.128 kb on + strand, within Shewana3_0039 at 46.130 kb on - strand, within Shewana3_0039 at 46.137 kb on + strand, within Shewana3_0039 at 46.171 kb on - strand, within Shewana3_0039 at 46.368 kb on + strand at 46.409 kb on - strand at 47.079 kb on + strand at 47.166 kb on - strand at 47.241 kb on - strand, within Shewana3_0041 at 47.256 kb on + strand, within Shewana3_0041 at 47.300 kb on + strand, within Shewana3_0041 at 48.161 kb on - strand, within Shewana3_0042 at 48.237 kb on - strand, within Shewana3_0042 at 48.252 kb on - strand, within Shewana3_0042 at 48.292 kb on - strand, within Shewana3_0042 at 48.415 kb on + strand, within Shewana3_0042 at 48.568 kb on + strand at 48.576 kb on - strand at 48.612 kb on - strand at 48.726 kb on + strand, within aroE at 48.742 kb on - strand, within aroE at 48.752 kb on - strand, within aroE at 48.834 kb on - strand, within aroE at 48.858 kb on + strand, within aroE at 48.873 kb on + strand, within aroE at 48.873 kb on + strand, within aroE at 48.881 kb on - strand, within aroE at 48.881 kb on - strand, within aroE at 48.922 kb on + strand, within aroE at 48.922 kb on + strand, within aroE at 48.929 kb on + strand, within aroE at 48.937 kb on - strand, within aroE
Per-strain Table
Position Strand Gene LocusTag Fraction syringaldehyde 1 mM remove 46,106 + Shewana3_0039 0.54 -1.2 46,122 + Shewana3_0039 0.57 +0.0 46,128 + Shewana3_0039 0.58 -0.4 46,130 - Shewana3_0039 0.58 -0.5 46,137 + Shewana3_0039 0.59 -0.1 46,171 - Shewana3_0039 0.65 +0.1 46,368 + +0.1 46,409 - -0.7 47,079 + -0.2 47,166 - -2.5 47,241 - Shewana3_0041 0.17 -1.5 47,256 + Shewana3_0041 0.18 -1.4 47,300 + Shewana3_0041 0.23 -2.0 48,161 - Shewana3_0042 0.30 -0.1 48,237 - Shewana3_0042 0.47 -0.6 48,252 - Shewana3_0042 0.51 -0.3 48,292 - Shewana3_0042 0.60 +0.2 48,415 + Shewana3_0042 0.88 -0.3 48,568 + -0.9 48,576 - +0.5 48,612 - -0.4 48,726 + aroE Shewana3_0043 0.10 +0.1 48,742 - aroE Shewana3_0043 0.12 -0.3 48,752 - aroE Shewana3_0043 0.13 +0.2 48,834 - aroE Shewana3_0043 0.22 -0.7 48,858 + aroE Shewana3_0043 0.25 -0.1 48,873 + aroE Shewana3_0043 0.27 -0.9 48,873 + aroE Shewana3_0043 0.27 +0.6 48,881 - aroE Shewana3_0043 0.28 -0.2 48,881 - aroE Shewana3_0043 0.28 -0.5 48,922 + aroE Shewana3_0043 0.32 -0.6 48,922 + aroE Shewana3_0043 0.32 -1.1 48,929 + aroE Shewana3_0043 0.33 -0.8 48,937 - aroE Shewana3_0043 0.34 -0.8
Or see this region's nucleotide sequence