Experiment: syringaldehyde 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_0031 and trkA are separated by 11 nucleotides trkA and Shewana3_0033 are separated by 15 nucleotides
Shewana3_0031: Shewana3_0031 - TrkH family potassium uptake protein (RefSeq), at 37,204 to 38,646
_0031
Shewana3_0032: trkA - potassium transporter peripheral membrane component (RefSeq), at 38,658 to 40,067
trkA
Shewana3_0033: Shewana3_0033 - sun protein (RefSeq), at 40,083 to 41,372
_0033
Position (kb) 38
39
40
41 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 37.739 kb on - strand, within Shewana3_0031 at 37.834 kb on + strand, within Shewana3_0031 at 38.063 kb on + strand, within Shewana3_0031 at 38.162 kb on + strand, within Shewana3_0031 at 38.180 kb on - strand, within Shewana3_0031 at 38.263 kb on + strand, within Shewana3_0031 at 38.314 kb on - strand, within Shewana3_0031 at 38.348 kb on - strand, within Shewana3_0031 at 38.549 kb on + strand at 38.566 kb on + strand at 38.569 kb on - strand at 38.581 kb on + strand at 40.163 kb on - strand at 40.189 kb on - strand at 40.411 kb on + strand, within Shewana3_0033 at 40.414 kb on - strand, within Shewana3_0033 at 40.419 kb on - strand, within Shewana3_0033 at 40.419 kb on - strand, within Shewana3_0033 at 40.443 kb on + strand, within Shewana3_0033 at 40.451 kb on - strand, within Shewana3_0033 at 40.583 kb on + strand, within Shewana3_0033 at 40.677 kb on + strand, within Shewana3_0033 at 40.685 kb on - strand, within Shewana3_0033 at 40.772 kb on - strand, within Shewana3_0033 at 40.814 kb on - strand, within Shewana3_0033 at 40.875 kb on + strand, within Shewana3_0033 at 40.889 kb on + strand, within Shewana3_0033 at 40.934 kb on + strand, within Shewana3_0033 at 40.958 kb on + strand, within Shewana3_0033 at 40.958 kb on + strand, within Shewana3_0033 at 40.966 kb on - strand, within Shewana3_0033 at 40.978 kb on + strand, within Shewana3_0033 at 41.020 kb on + strand, within Shewana3_0033 at 41.030 kb on + strand, within Shewana3_0033
Per-strain Table
Position Strand Gene LocusTag Fraction syringaldehyde 1 mM remove 37,739 - Shewana3_0031 0.37 -0.4 37,834 + Shewana3_0031 0.44 -3.1 38,063 + Shewana3_0031 0.60 -0.2 38,162 + Shewana3_0031 0.66 -0.4 38,180 - Shewana3_0031 0.68 -0.3 38,263 + Shewana3_0031 0.73 +0.3 38,314 - Shewana3_0031 0.77 -0.0 38,348 - Shewana3_0031 0.79 +0.3 38,549 + -0.0 38,566 + +0.2 38,569 - +0.5 38,581 + -0.2 40,163 - -1.1 40,189 - -0.7 40,411 + Shewana3_0033 0.25 -1.1 40,414 - Shewana3_0033 0.26 -0.2 40,419 - Shewana3_0033 0.26 -0.4 40,419 - Shewana3_0033 0.26 -0.3 40,443 + Shewana3_0033 0.28 -1.0 40,451 - Shewana3_0033 0.29 -1.0 40,583 + Shewana3_0033 0.39 -0.9 40,677 + Shewana3_0033 0.46 -0.9 40,685 - Shewana3_0033 0.47 -0.6 40,772 - Shewana3_0033 0.53 -0.6 40,814 - Shewana3_0033 0.57 -0.7 40,875 + Shewana3_0033 0.61 -1.1 40,889 + Shewana3_0033 0.62 -0.6 40,934 + Shewana3_0033 0.66 -1.1 40,958 + Shewana3_0033 0.68 -1.5 40,958 + Shewana3_0033 0.68 -0.1 40,966 - Shewana3_0033 0.68 -0.9 40,978 + Shewana3_0033 0.69 -0.9 41,020 + Shewana3_0033 0.73 -0.8 41,030 + Shewana3_0033 0.73 -0.9
Or see this region's nucleotide sequence