Experiment: syringaldehyde 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_0029 and Shewana3_0030 are separated by 198 nucleotides Shewana3_0030 and Shewana3_0031 are separated by 46 nucleotides Shewana3_0031 and trkA are separated by 11 nucleotides
Shewana3_0029: Shewana3_0029 - ArsR family transcriptional regulator (RefSeq), at 36,096 to 36,404
_0029
Shewana3_0030: Shewana3_0030 - protoporphyrinogen oxidase (RefSeq), at 36,603 to 37,157
_0030
Shewana3_0031: Shewana3_0031 - TrkH family potassium uptake protein (RefSeq), at 37,204 to 38,646
_0031
Shewana3_0032: trkA - potassium transporter peripheral membrane component (RefSeq), at 38,658 to 40,067
trkA
Position (kb) 37
38
39 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 36.593 kb on + strand at 36.691 kb on + strand, within Shewana3_0030 at 36.696 kb on + strand, within Shewana3_0030 at 36.775 kb on + strand, within Shewana3_0030 at 36.884 kb on + strand, within Shewana3_0030 at 37.007 kb on - strand, within Shewana3_0030 at 37.008 kb on + strand, within Shewana3_0030 at 37.114 kb on - strand at 37.122 kb on + strand at 37.228 kb on + strand at 37.236 kb on - strand at 37.347 kb on + strand at 37.461 kb on + strand, within Shewana3_0031 at 37.461 kb on + strand, within Shewana3_0031 at 37.623 kb on - strand, within Shewana3_0031 at 37.739 kb on - strand, within Shewana3_0031 at 37.834 kb on + strand, within Shewana3_0031 at 38.063 kb on + strand, within Shewana3_0031 at 38.162 kb on + strand, within Shewana3_0031 at 38.180 kb on - strand, within Shewana3_0031 at 38.263 kb on + strand, within Shewana3_0031 at 38.314 kb on - strand, within Shewana3_0031 at 38.348 kb on - strand, within Shewana3_0031 at 38.549 kb on + strand at 38.566 kb on + strand at 38.569 kb on - strand at 38.581 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction syringaldehyde 1 mM remove 36,593 + -0.4 36,691 + Shewana3_0030 0.16 -0.4 36,696 + Shewana3_0030 0.17 +0.0 36,775 + Shewana3_0030 0.31 +0.7 36,884 + Shewana3_0030 0.51 +0.3 37,007 - Shewana3_0030 0.73 +0.3 37,008 + Shewana3_0030 0.73 +0.1 37,114 - +0.1 37,122 + +0.3 37,228 + -0.5 37,236 - +1.6 37,347 + +0.3 37,461 + Shewana3_0031 0.18 -0.1 37,461 + Shewana3_0031 0.18 -0.3 37,623 - Shewana3_0031 0.29 +0.2 37,739 - Shewana3_0031 0.37 -0.4 37,834 + Shewana3_0031 0.44 -3.1 38,063 + Shewana3_0031 0.60 -0.2 38,162 + Shewana3_0031 0.66 -0.4 38,180 - Shewana3_0031 0.68 -0.3 38,263 + Shewana3_0031 0.73 +0.3 38,314 - Shewana3_0031 0.77 -0.0 38,348 - Shewana3_0031 0.79 +0.3 38,549 + -0.0 38,566 + +0.2 38,569 - +0.5 38,581 + -0.2
Or see this region's nucleotide sequence