Experiment: syringaldehyde 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_4311 and Shewana3_4312 are separated by 37 nucleotides Shewana3_4312 and Shewana3_4313 are separated by 3 nucleotides Shewana3_4313 and Shewana3_4314 are separated by 55 nucleotides Shewana3_4314 and Shewana3_4315 are separated by 93 nucleotides Shewana3_4315 and Shewana3_4316 overlap by 4 nucleotides
Shewana3_4311: Shewana3_4311 - putative mercuric reductase (RefSeq), at 200,669 to 202,324
_4311
Shewana3_4312: Shewana3_4312 - putative mercury transport protein MerC (RefSeq), at 202,362 to 202,781
_4312
Shewana3_4313: Shewana3_4313 - mercuric transport protein periplasmic component (RefSeq), at 202,785 to 203,060
_4313
Shewana3_4314: Shewana3_4314 - mercuric transporter MerT (RefSeq), at 203,116 to 203,463
_4314
Shewana3_4315: Shewana3_4315 - MerR family transcriptional regulator (RefSeq), at 203,557 to 203,949
_4315
Shewana3_4316: Shewana3_4316 - phage integrase family protein (RefSeq), at 203,946 to 204,968
_4316
Position (kb) 202
203
204 Strain fitness (log2 ratio) -2
-1
0
1 at 201.815 kb on - strand, within Shewana3_4311 at 201.826 kb on + strand, within Shewana3_4311 at 201.849 kb on + strand, within Shewana3_4311 at 202.114 kb on + strand, within Shewana3_4311 at 202.274 kb on - strand at 202.367 kb on - strand at 202.580 kb on + strand, within Shewana3_4312 at 202.588 kb on - strand, within Shewana3_4312 at 202.825 kb on + strand, within Shewana3_4313 at 202.973 kb on - strand, within Shewana3_4313 at 203.242 kb on + strand, within Shewana3_4314 at 203.250 kb on - strand, within Shewana3_4314 at 203.390 kb on + strand, within Shewana3_4314 at 203.395 kb on + strand, within Shewana3_4314 at 203.398 kb on - strand, within Shewana3_4314 at 203.403 kb on - strand, within Shewana3_4314 at 203.403 kb on - strand, within Shewana3_4314 at 203.944 kb on + strand at 203.962 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction syringaldehyde 1 mM remove 201,815 - Shewana3_4311 0.69 +0.9 201,826 + Shewana3_4311 0.70 -0.3 201,849 + Shewana3_4311 0.71 +0.1 202,114 + Shewana3_4311 0.87 +0.7 202,274 - +0.7 202,367 - +0.0 202,580 + Shewana3_4312 0.52 +0.1 202,588 - Shewana3_4312 0.54 +0.1 202,825 + Shewana3_4313 0.14 -1.8 202,973 - Shewana3_4313 0.68 -1.4 203,242 + Shewana3_4314 0.36 -0.4 203,250 - Shewana3_4314 0.39 +0.3 203,390 + Shewana3_4314 0.79 +0.1 203,395 + Shewana3_4314 0.80 +0.3 203,398 - Shewana3_4314 0.81 +0.0 203,403 - Shewana3_4314 0.82 -0.0 203,403 - Shewana3_4314 0.82 +0.3 203,944 + -0.4 203,962 - -0.1
Or see this region's nucleotide sequence