Experiment: syringaldehyde 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_4300 and Shewana3_4301 are separated by 95 nucleotides Shewana3_4301 and Shewana3_4302 are separated by 126 nucleotides
Shewana3_4300: Shewana3_4300 - CzcA family heavy metal efflux protein (RefSeq), at 183,606 to 186,752
_4300
Shewana3_4301: Shewana3_4301 - hypothetical protein (RefSeq), at 186,848 to 187,279
_4301
Shewana3_4302: Shewana3_4302 - heavy metal translocating P-type ATPase (RefSeq), at 187,406 to 189,853
_4302
Position (kb) 186
187
188 Strain fitness (log2 ratio) -1
0
1 at 185.989 kb on + strand, within Shewana3_4300 at 185.997 kb on - strand, within Shewana3_4300 at 186.311 kb on - strand, within Shewana3_4300 at 186.337 kb on - strand, within Shewana3_4300 at 186.516 kb on - strand at 186.558 kb on + strand at 186.768 kb on + strand at 186.811 kb on - strand at 186.825 kb on + strand at 186.832 kb on + strand at 187.154 kb on + strand, within Shewana3_4301 at 187.609 kb on - strand at 187.691 kb on - strand, within Shewana3_4302 at 187.691 kb on - strand, within Shewana3_4302 at 187.763 kb on + strand, within Shewana3_4302 at 187.786 kb on + strand, within Shewana3_4302 at 187.836 kb on + strand, within Shewana3_4302 at 187.931 kb on + strand, within Shewana3_4302 at 187.967 kb on + strand, within Shewana3_4302 at 187.969 kb on + strand, within Shewana3_4302 at 188.241 kb on + strand, within Shewana3_4302
Per-strain Table
Position Strand Gene LocusTag Fraction syringaldehyde 1 mM remove 185,989 + Shewana3_4300 0.76 -0.3 185,997 - Shewana3_4300 0.76 +0.4 186,311 - Shewana3_4300 0.86 -0.4 186,337 - Shewana3_4300 0.87 -0.3 186,516 - +0.3 186,558 + +0.3 186,768 + +0.1 186,811 - -0.4 186,825 + -0.0 186,832 + -0.1 187,154 + Shewana3_4301 0.71 +0.4 187,609 - +0.1 187,691 - Shewana3_4302 0.12 +1.0 187,691 - Shewana3_4302 0.12 +0.9 187,763 + Shewana3_4302 0.15 -0.6 187,786 + Shewana3_4302 0.16 +0.0 187,836 + Shewana3_4302 0.18 +0.2 187,931 + Shewana3_4302 0.21 +0.0 187,967 + Shewana3_4302 0.23 +0.1 187,969 + Shewana3_4302 0.23 +0.1 188,241 + Shewana3_4302 0.34 -0.1
Or see this region's nucleotide sequence