Experiment: syringaldehyde 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_4254 and Shewana3_4255 are separated by 423 nucleotides Shewana3_4255 and Shewana3_4256 are separated by 9 nucleotides Shewana3_4256 and Shewana3_4257 are separated by 0 nucleotides Shewana3_4257 and Shewana3_4258 are separated by 3 nucleotides
Shewana3_4254: Shewana3_4254 - phage integrase family protein (RefSeq), at 131,864 to 133,129
_4254
Shewana3_4255: Shewana3_4255 - hypothetical protein (RefSeq), at 133,553 to 133,855
_4255
Shewana3_4256: Shewana3_4256 - hypothetical protein (RefSeq), at 133,865 to 134,134
_4256
Shewana3_4257: Shewana3_4257 - hypothetical protein (RefSeq), at 134,135 to 134,677
_4257
Shewana3_4258: Shewana3_4258 - TraB pilus assembly family protein (RefSeq), at 134,681 to 136,039
_4258
Position (kb) 133
134 Strain fitness (log2 ratio) -1
0
1 at 132.587 kb on + strand, within Shewana3_4254 at 132.597 kb on - strand, within Shewana3_4254 at 132.660 kb on + strand, within Shewana3_4254 at 132.714 kb on + strand, within Shewana3_4254 at 132.714 kb on + strand, within Shewana3_4254 at 132.745 kb on - strand, within Shewana3_4254 at 132.745 kb on - strand, within Shewana3_4254 at 132.780 kb on - strand, within Shewana3_4254 at 132.898 kb on + strand, within Shewana3_4254 at 132.909 kb on + strand, within Shewana3_4254 at 132.917 kb on - strand, within Shewana3_4254 at 132.997 kb on - strand, within Shewana3_4254 at 133.282 kb on + strand at 133.655 kb on - strand, within Shewana3_4255 at 133.858 kb on - strand at 133.873 kb on + strand at 133.921 kb on + strand, within Shewana3_4256 at 134.038 kb on - strand, within Shewana3_4256 at 134.275 kb on + strand, within Shewana3_4257 at 134.283 kb on - strand, within Shewana3_4257 at 134.345 kb on + strand, within Shewana3_4257 at 134.371 kb on + strand, within Shewana3_4257 at 134.379 kb on - strand, within Shewana3_4257 at 134.440 kb on - strand, within Shewana3_4257 at 134.540 kb on + strand, within Shewana3_4257 at 134.577 kb on + strand, within Shewana3_4257 at 134.814 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction syringaldehyde 1 mM remove 132,587 + Shewana3_4254 0.57 -0.1 132,597 - Shewana3_4254 0.58 +0.5 132,660 + Shewana3_4254 0.63 -0.1 132,714 + Shewana3_4254 0.67 +0.3 132,714 + Shewana3_4254 0.67 -0.9 132,745 - Shewana3_4254 0.70 -0.2 132,745 - Shewana3_4254 0.70 +0.3 132,780 - Shewana3_4254 0.72 +0.3 132,898 + Shewana3_4254 0.82 -0.3 132,909 + Shewana3_4254 0.83 -0.2 132,917 - Shewana3_4254 0.83 +0.2 132,997 - Shewana3_4254 0.89 -1.3 133,282 + -0.3 133,655 - Shewana3_4255 0.34 +0.6 133,858 - +0.3 133,873 + -0.1 133,921 + Shewana3_4256 0.21 -0.2 134,038 - Shewana3_4256 0.64 +0.1 134,275 + Shewana3_4257 0.26 -0.6 134,283 - Shewana3_4257 0.27 +0.4 134,345 + Shewana3_4257 0.39 -0.7 134,371 + Shewana3_4257 0.43 +0.1 134,379 - Shewana3_4257 0.45 +0.2 134,440 - Shewana3_4257 0.56 +0.2 134,540 + Shewana3_4257 0.75 +0.1 134,577 + Shewana3_4257 0.81 +0.1 134,814 + +0.8
Or see this region's nucleotide sequence