Experiment: syringaldehyde 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_4172 and Shewana3_4173 overlap by 4 nucleotides Shewana3_4173 and Shewana3_4174 are separated by 205 nucleotides Shewana3_4174 and Shewana3_4175 are separated by 240 nucleotides
Shewana3_4172: Shewana3_4172 - DNA-directed DNA polymerase (RefSeq), at 38,365 to 39,615
_4172
Shewana3_4173: Shewana3_4173 - putative prophage repressor (RefSeq), at 39,612 to 40,346
_4173
Shewana3_4174: Shewana3_4174 - hypothetical protein (RefSeq), at 40,552 to 40,911
_4174
Shewana3_4175: Shewana3_4175 - hypothetical protein (RefSeq), at 41,152 to 42,258
_4175
Position (kb) 40
41 Strain fitness (log2 ratio) -2
-1
0
1
2 at 39.564 kb on + strand at 39.608 kb on - strand at 39.649 kb on - strand at 39.663 kb on - strand at 39.681 kb on + strand at 39.694 kb on + strand, within Shewana3_4173 at 39.747 kb on + strand, within Shewana3_4173 at 39.755 kb on - strand, within Shewana3_4173 at 39.784 kb on + strand, within Shewana3_4173 at 39.852 kb on + strand, within Shewana3_4173 at 40.203 kb on - strand, within Shewana3_4173 at 40.244 kb on + strand, within Shewana3_4173 at 40.304 kb on - strand at 40.459 kb on + strand at 40.467 kb on - strand at 40.477 kb on - strand at 40.526 kb on + strand at 40.544 kb on - strand at 40.544 kb on - strand at 40.544 kb on - strand at 40.544 kb on - strand at 40.573 kb on - strand at 40.791 kb on - strand, within Shewana3_4174 at 40.840 kb on - strand, within Shewana3_4174 at 40.874 kb on - strand, within Shewana3_4174 at 40.881 kb on + strand at 41.088 kb on - strand at 41.271 kb on - strand, within Shewana3_4175 at 41.863 kb on + strand, within Shewana3_4175
Per-strain Table
Position Strand Gene LocusTag Fraction syringaldehyde 1 mM remove 39,564 + +1.6 39,608 - +0.0 39,649 - +0.2 39,663 - -0.0 39,681 + -0.2 39,694 + Shewana3_4173 0.11 -1.2 39,747 + Shewana3_4173 0.18 -0.4 39,755 - Shewana3_4173 0.19 +0.3 39,784 + Shewana3_4173 0.23 -0.5 39,852 + Shewana3_4173 0.33 -0.4 40,203 - Shewana3_4173 0.80 +0.3 40,244 + Shewana3_4173 0.86 +0.3 40,304 - +0.3 40,459 + +0.3 40,467 - +0.1 40,477 - -0.4 40,526 + -1.8 40,544 - -0.2 40,544 - +0.1 40,544 - -0.0 40,544 - +0.3 40,573 - +0.1 40,791 - Shewana3_4174 0.66 +1.8 40,840 - Shewana3_4174 0.80 +0.4 40,874 - Shewana3_4174 0.89 -1.5 40,881 + +0.3 41,088 - -0.1 41,271 - Shewana3_4175 0.11 +1.6 41,863 + Shewana3_4175 0.64 +0.2
Or see this region's nucleotide sequence