Strain Fitness in Bacteroides thetaiotaomicron VPI-5482 around BT4537

Experiment: BHIS with Fusidic 0.004 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	BHIS with Fusidic 0.004 mg/ml
5,955,405	-				-1.6
5,955,418	+				-2.0
5,955,441	-				-1.2
5,955,450	-				+1.4
5,955,641	+		BT4536	0.25	+0.3
5,955,642	-		BT4536	0.25	-0.5
5,955,661	+		BT4536	0.27	-2.3
5,955,661	+		BT4536	0.27	+1.4
5,955,661	+		BT4536	0.27	+0.8
5,955,702	-		BT4536	0.32	-0.2
5,955,833	+		BT4536	0.46	+1.7
5,955,840	-		BT4536	0.47	-2.5
5,955,840	-		BT4536	0.47	-1.9
5,955,840	-		BT4536	0.47	-2.2
5,955,888	-		BT4536	0.52	-0.7
5,955,888	-		BT4536	0.52	-2.3
5,955,928	-		BT4536	0.56	-2.2
5,955,973	-		BT4536	0.61	-1.5
5,955,989	+		BT4536	0.63	-1.2
5,955,990	-		BT4536	0.63	-2.1
5,956,022	-		BT4536	0.66	-1.1
5,956,063	-		BT4536	0.71	-2.5
5,956,066	-		BT4536	0.71	-2.5
5,956,070	+		BT4536	0.72	+0.7
5,956,073	-		BT4536	0.72	-2.3
5,956,168	-		BT4536	0.82	-1.3
5,956,197	+		BT4536	0.85	-0.2
5,956,198	-		BT4536	0.85	-0.9
5,956,281	-				-0.2
5,956,324	-				-1.8
5,956,337	-				-3.2
5,956,343	+				-0.2
5,956,354	+				-1.0
5,956,355	-				-1.4
5,956,462	+				-0.6
5,956,465	+				+0.7
5,956,465	+				-0.9
5,956,466	-				+0.8
5,956,466	-				-2.8
5,956,484	-				+1.4
5,956,539	-		BT4537	0.12	-1.6
5,956,547	-		BT4537	0.12	+0.3
5,956,580	-		BT4537	0.14	-3.1
5,956,589	-		BT4537	0.15	-2.0
5,956,615	-		BT4537	0.16	-1.9
5,956,615	-		BT4537	0.16	-1.2
5,956,652	-		BT4537	0.18	-1.6
5,956,657	+		BT4537	0.19	-1.3
5,956,658	-		BT4537	0.19	+1.2
5,956,666	-		BT4537	0.19	-1.6
5,956,719	+		BT4537	0.22	+2.4
5,956,748	-		BT4537	0.24	-1.1
5,956,825	-		BT4537	0.29	-2.1
5,956,853	+		BT4537	0.30	-2.9
5,956,968	+		BT4537	0.37	+0.5
5,956,968	+		BT4537	0.37	-2.8
5,956,969	-		BT4537	0.37	-1.1
5,956,981	-		BT4537	0.38	-2.7
5,957,009	+		BT4537	0.39	-2.5
5,957,010	-		BT4537	0.39	-1.8
5,957,029	-		BT4537	0.41	-0.9
5,957,067	-		BT4537	0.43	-0.2
5,957,067	-		BT4537	0.43	-1.3
5,957,099	-		BT4537	0.45	-0.5
5,957,099	-		BT4537	0.45	+1.4
5,957,141	-		BT4537	0.47	-1.4
5,957,210	+		BT4537	0.51	+0.1
5,957,210	+		BT4537	0.51	-1.5
5,957,210	+		BT4537	0.51	-1.0
5,957,230	+		BT4537	0.52	-0.5
5,957,233	-		BT4537	0.53	-0.4
5,957,233	-		BT4537	0.53	-2.4
5,957,238	-		BT4537	0.53	-1.9
5,957,269	-		BT4537	0.55	-1.6
5,957,276	-		BT4537	0.55	-1.6
5,957,323	-		BT4537	0.58	-3.5
5,957,333	-		BT4537	0.58	-1.2
5,957,347	+		BT4537	0.59	+0.4
5,957,380	-		BT4537	0.61	-1.2
5,957,421	-		BT4537	0.64	-1.2
5,957,435	-		BT4537	0.64	-2.0
5,957,435	-		BT4537	0.64	-1.9
5,957,505	+		BT4537	0.69	-1.6
5,957,506	-		BT4537	0.69	+1.4
5,957,506	-		BT4537	0.69	-1.1
5,957,510	-		BT4537	0.69	-2.8
5,957,536	+		BT4537	0.70	-1.4
5,957,567	+		BT4537	0.72	-1.2
5,957,568	-		BT4537	0.72	-2.2
5,957,655	-		BT4537	0.77	-3.0
5,957,655	-		BT4537	0.77	+0.1
5,957,655	-		BT4537	0.77	-1.3
5,957,682	+		BT4537	0.79	-0.6
5,957,723	+		BT4537	0.81	-0.2
5,957,737	+		BT4537	0.82	-0.3
5,957,738	-		BT4537	0.82	-0.6
5,957,738	-		BT4537	0.82	-0.5
5,957,742	-		BT4537	0.82	-1.5
5,957,796	+		BT4537	0.86	-0.2
5,957,796	+		BT4537	0.86	-2.5
5,957,800	+		BT4537	0.86	+0.7
5,957,824	+		BT4537	0.87	-1.7
5,957,882	-				+0.3
5,957,960	-				-1.8
5,957,960	-				+1.4
5,957,970	-				-3.3
5,958,125	+				+1.4
5,958,152	+				-2.1
5,958,152	+				-1.2
5,958,230	+		BT4538	0.11	-1.9
5,958,230	+		BT4538	0.11	+0.8
5,958,231	-		BT4538	0.11	+0.4
5,958,273	-		BT4538	0.14	-1.3
5,958,322	-		BT4538	0.17	-0.5
5,958,365	+				+1.4
5,958,389	-		BT4538	0.21	+1.4
5,958,429	-		BT4538	0.24	-0.3
5,958,519	-		BT4538	0.30	+0.2
5,958,575	-		BT4538	0.33	-1.2
5,958,596	+		BT4538	0.35	-0.3
5,958,597	-		BT4538	0.35	-1.4
5,958,620	+		BT4538	0.36	-3.7
5,958,670	-		BT4538	0.39	+0.2
5,958,672	-		BT4538	0.40	-2.3
5,958,697	+		BT4538	0.41	-0.9
5,958,697	+		BT4538	0.41	-3.0
5,958,742	-		BT4538	0.44	+1.0
5,958,742	-		BT4538	0.44	-0.9
5,958,772	+		BT4538	0.46	+1.4
5,958,788	+		BT4538	0.47	-0.9
5,958,789	-		BT4538	0.47	-0.6
5,958,837	+		BT4538	0.50	+0.4
5,958,840	-		BT4538	0.50	-0.4
5,958,857	+		BT4538	0.51	+0.8
5,958,909	-		BT4538	0.55	-1.6