Strain Fitness in Bacteroides thetaiotaomicron VPI-5482 around BT4535

Experiment: BHIS with Fusidic 0.004 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	BHIS with Fusidic 0.004 mg/ml
5,951,597	+		BT4533	0.60	+0.5
5,951,704	+		BT4533	0.68	+0.8
5,951,828	+		BT4533	0.77	+1.4
5,951,837	+		BT4533	0.78	-1.0
5,951,871	+		BT4533	0.81	+0.6
5,951,940	-		BT4533	0.86	+0.3
5,951,976	-		BT4533	0.88	+0.1
5,951,976	-		BT4533	0.88	+0.3
5,952,034	+				+0.8
5,952,063	-				+0.1
5,952,159	-				+0.8
5,952,220	-				+0.2
5,952,224	-				+1.4
5,952,224	-				+0.4
5,952,224	-				-1.9
5,952,269	+				-1.2
5,952,269	+				-0.4
5,952,270	-				-1.2
5,952,270	-				-0.5
5,952,320	-		BT4534	0.16	-2.5
5,952,363	-		BT4534	0.32	-1.8
5,952,364	+		BT4534	0.32	+0.6
5,952,374	+		BT4534	0.35	+1.1
5,952,464	-		BT4534	0.67	-0.3
5,952,480	-		BT4534	0.73	-0.6
5,952,480	-		BT4534	0.73	-1.4
5,952,480	-		BT4534	0.73	+1.1
5,952,544	+				-0.3
5,952,545	-				-1.8
5,952,555	+				-1.3
5,952,578	-				-0.5
5,952,622	+				-1.4
5,952,622	+				-0.2
5,952,623	-				-1.0
5,952,641	+				-0.1
5,952,648	-				-2.5
5,952,678	-				+1.9
5,952,740	-				-0.2
5,952,740	-				-1.7
5,952,779	+				+1.2
5,952,859	+				-1.9
5,952,859	+				+0.4
5,952,860	-				-2.7
5,952,860	-				-2.6
5,952,860	-				-0.7
5,952,860	-				-0.2
5,952,862	-		BT4535	0.10	+0.7
5,952,877	-		BT4535	0.11	-0.9
5,953,034	+		BT4535	0.16	-0.2
5,953,034	+		BT4535	0.16	-1.4
5,953,034	+		BT4535	0.16	-0.0
5,953,044	+		BT4535	0.16	-2.9
5,953,085	+		BT4535	0.18	+1.4
5,953,120	+		BT4535	0.19	+0.2
5,953,120	+		BT4535	0.19	-1.9
5,953,127	+		BT4535	0.19	+0.7
5,953,139	-		BT4535	0.20	-1.2
5,953,148	-		BT4535	0.20	-0.2
5,953,148	-		BT4535	0.20	-1.8
5,953,156	+		BT4535	0.20	-0.2
5,953,157	-		BT4535	0.20	-2.4
5,953,211	-		BT4535	0.22	-1.5
5,953,258	-		BT4535	0.24	-0.5
5,953,265	+		BT4535	0.24	-0.4
5,953,266	-		BT4535	0.24	-2.8
5,953,267	+		BT4535	0.24	+0.7
5,953,267	+		BT4535	0.24	+0.2
5,953,323	-		BT4535	0.26	-0.2
5,953,373	+		BT4535	0.28	-0.4
5,953,375	+		BT4535	0.28	-2.1
5,953,376	-		BT4535	0.28	-1.0
5,953,384	+		BT4535	0.28	+0.3
5,953,388	-		BT4535	0.29	+1.4
5,953,463	-		BT4535	0.31	-3.4
5,953,463	-		BT4535	0.31	-1.9
5,953,511	+		BT4535	0.33	-2.3
5,953,536	+		BT4535	0.34	-2.6
5,953,537	-		BT4535	0.34	-2.8
5,953,537	-		BT4535	0.34	-0.6
5,953,541	-		BT4535	0.34	-2.1
5,953,541	-		BT4535	0.34	-0.9
5,953,543	+		BT4535	0.34	+0.1
5,953,729	+		BT4535	0.41	-1.1
5,953,730	-		BT4535	0.41	+0.2
5,953,737	+		BT4535	0.41	-0.8
5,953,786	+		BT4535	0.43	-1.0
5,953,787	-		BT4535	0.43	-1.8
5,953,816	+		BT4535	0.44	-0.2
5,953,816	+		BT4535	0.44	+0.4
5,953,817	-		BT4535	0.44	-1.6
5,953,831	-		BT4535	0.44	-0.6
5,953,850	-		BT4535	0.45	-0.2
5,953,854	-		BT4535	0.45	-2.8
5,953,854	-		BT4535	0.45	-1.0
5,953,911	-		BT4535	0.47	+1.4
5,953,926	+		BT4535	0.48	-1.2
5,954,053	-		BT4535	0.52	-2.4
5,954,053	-		BT4535	0.52	-2.7
5,954,053	-		BT4535	0.52	-1.4
5,954,053	-		BT4535	0.52	-1.4
5,954,053	-		BT4535	0.52	-0.8
5,954,057	+		BT4535	0.52	-1.4
5,954,058	-				+0.6
5,954,068	-		BT4535	0.53	-0.9
5,954,068	-		BT4535	0.53	-0.7
5,954,114	+		BT4535	0.54	-0.3
5,954,115	-		BT4535	0.54	-1.2
5,954,115	-		BT4535	0.54	-2.5
5,954,115	-		BT4535	0.54	+1.4
5,954,123	-		BT4535	0.55	-1.6
5,954,129	-		BT4535	0.55	-2.2
5,954,168	+		BT4535	0.56	-0.1
5,954,169	-		BT4535	0.56	-3.5
5,954,223	-		BT4535	0.58	-1.2
5,954,273	+		BT4535	0.60	+0.6
5,954,348	-		BT4535	0.63	+1.4
5,954,371	+		BT4535	0.63	+0.8
5,954,391	-		BT4535	0.64	-1.7
5,954,411	+		BT4535	0.65	-0.2
5,954,411	+		BT4535	0.65	-1.1
5,954,515	+		BT4535	0.68	-1.2
5,954,521	+		BT4535	0.69	-0.9
5,954,525	-		BT4535	0.69	-1.4
5,954,557	+		BT4535	0.70	+1.0
5,954,558	-		BT4535	0.70	-2.3
5,954,558	-		BT4535	0.70	-2.3
5,954,559	+		BT4535	0.70	+1.0
5,954,563	-		BT4535	0.70	-1.0
5,954,596	+		BT4535	0.71	-0.2
5,954,597	-		BT4535	0.71	-1.4
5,954,646	+		BT4535	0.73	-2.8
5,954,701	+		BT4535	0.75	+0.1
5,954,724	+		BT4535	0.76	-1.2
5,954,730	+		BT4535	0.76	-0.2
5,954,732	+		BT4535	0.76	-0.4
5,954,733	-		BT4535	0.76	+1.4
5,954,793	-		BT4535	0.78	+1.6
5,954,794	+		BT4535	0.78	+0.4
5,954,794	+		BT4535	0.78	+0.2
5,954,795	-		BT4535	0.78	-1.8
5,954,795	-		BT4535	0.78	-3.1
5,954,816	-		BT4535	0.79	-1.8
5,954,925	+		BT4535	0.83	-1.2
5,954,925	+		BT4535	0.83	-0.2
5,954,926	-		BT4535	0.83	-1.1
5,954,938	+		BT4535	0.83	-1.6
5,954,952	-		BT4535	0.84	-0.2
5,954,964	+		BT4535	0.84	+0.9
5,954,965	-		BT4535	0.84	+0.4
5,954,969	-		BT4535	0.85	-1.3
5,954,986	+		BT4535	0.85	+1.4
5,954,987	-		BT4535	0.85	-1.8
5,955,017	-		BT4535	0.86	+1.4
5,955,131	-				-0.3
5,955,175	+				-0.1
5,955,245	-				-2.3
5,955,332	-				-1.5
5,955,405	-				-1.6
5,955,418	+				-2.0
5,955,441	-				-1.2
5,955,450	-				+1.4
5,955,641	+		BT4536	0.25	+0.3
5,955,642	-		BT4536	0.25	-0.5
5,955,661	+		BT4536	0.27	-2.3
5,955,661	+		BT4536	0.27	+1.4
5,955,661	+		BT4536	0.27	+0.8
5,955,702	-		BT4536	0.32	-0.2
5,955,833	+		BT4536	0.46	+1.7
5,955,840	-		BT4536	0.47	-2.5
5,955,840	-		BT4536	0.47	-1.9
5,955,840	-		BT4536	0.47	-2.2
5,955,888	-		BT4536	0.52	-0.7
5,955,888	-		BT4536	0.52	-2.3
5,955,928	-		BT4536	0.56	-2.2
5,955,973	-		BT4536	0.61	-1.5
5,955,989	+		BT4536	0.63	-1.2
5,955,990	-		BT4536	0.63	-2.1
5,956,022	-		BT4536	0.66	-1.1
5,956,063	-		BT4536	0.71	-2.5
5,956,066	-		BT4536	0.71	-2.5
5,956,070	+		BT4536	0.72	+0.7
5,956,073	-		BT4536	0.72	-2.3
5,956,168	-		BT4536	0.82	-1.3
5,956,197	+		BT4536	0.85	-0.2
5,956,198	-		BT4536	0.85	-0.9
5,956,281	-				-0.2
5,956,324	-				-1.8
5,956,337	-				-3.2
5,956,343	+				-0.2
5,956,354	+				-1.0
5,956,355	-				-1.4