Strain Fitness in Bacteroides thetaiotaomicron VPI-5482 around BT4080

Experiment: BHIS with Fusidic 0.004 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	BHIS with Fusidic 0.004 mg/ml
5,320,520	-		BT4079	0.59	-0.8
5,320,531	+		BT4079	0.59	-0.8
5,320,531	+		BT4079	0.59	+0.0
5,320,532	-		BT4079	0.59	-0.4
5,320,532	-		BT4079	0.59	+0.3
5,320,578	-		BT4079	0.62	-0.1
5,320,606	-		BT4079	0.64	+1.5
5,320,614	-		BT4079	0.64	+0.8
5,320,624	-		BT4079	0.65	-3.1
5,320,666	-		BT4079	0.67	-2.0
5,320,753	-		BT4079	0.72	-3.5
5,320,766	-		BT4079	0.73	+0.5
5,320,766	-		BT4079	0.73	-0.8
5,320,769	-		BT4079	0.73	-1.0
5,320,769	-		BT4079	0.73	+0.5
5,320,784	+		BT4079	0.74	+1.4
5,320,784	+		BT4079	0.74	+0.0
5,320,785	-		BT4079	0.74	-1.8
5,320,825	-		BT4079	0.76	-0.3
5,320,921	-		BT4079	0.82	+0.5
5,320,941	+		BT4079	0.83	-0.3
5,321,003	-		BT4079	0.86	-0.2
5,321,003	-		BT4079	0.86	-1.6
5,321,006	+		BT4079	0.86	+0.1
5,321,035	+		BT4079	0.88	-0.7
5,321,036	-		BT4079	0.88	-1.5
5,321,060	-		BT4079	0.89	-0.5
5,321,096	-				-2.3
5,321,175	-				-1.7
5,321,214	+				+0.4
5,321,215	-				-0.3
5,321,273	-				-1.5
5,321,315	+				-1.3
5,321,604	-		BT4080	0.13	-0.5
5,321,631	-		BT4080	0.15	-1.1
5,321,631	-		BT4080	0.15	+0.6
5,321,697	-		BT4080	0.19	+1.4
5,321,697	-		BT4080	0.19	-0.2
5,321,697	-		BT4080	0.19	+0.9
5,321,697	-		BT4080	0.19	+1.0
5,321,729	+		BT4080	0.22	+0.5
5,321,729	+		BT4080	0.22	+0.3
5,321,730	-		BT4080	0.22	+2.5
5,321,730	-		BT4080	0.22	+1.5
5,321,761	+		BT4080	0.24	+0.6
5,321,762	-		BT4080	0.24	-1.1
5,321,767	+		BT4080	0.25	+0.5
5,321,768	-		BT4080	0.25	+0.0
5,321,768	-		BT4080	0.25	-1.6
5,321,780	-		BT4080	0.26	+0.2
5,321,829	-		BT4080	0.29	-2.0
5,321,876	+		BT4080	0.33	+2.6
5,321,877	-		BT4080	0.33	-1.1
5,321,877	-		BT4080	0.33	+0.2
5,321,909	+		BT4080	0.35	-0.8
5,321,910	-		BT4080	0.35	+1.5
5,321,922	-		BT4080	0.36	+2.3
5,321,963	+		BT4080	0.39	-0.9
5,321,964	-		BT4080	0.39	-2.0
5,322,017	-		BT4080	0.43	+0.5
5,322,035	+		BT4080	0.44	-1.0
5,322,113	+		BT4080	0.50	-0.2
5,322,130	-		BT4080	0.51	-1.8
5,322,151	-		BT4080	0.53	-0.5
5,322,162	-		BT4080	0.53	+1.7
5,322,162	-		BT4080	0.53	-0.1
5,322,207	-		BT4080	0.57	+0.9
5,322,207	-		BT4080	0.57	-1.5
5,322,284	-		BT4080	0.62	+0.4
5,322,311	-		BT4080	0.64	+1.6
5,322,376	-		BT4080	0.69	-0.8
5,322,431	+		BT4080	0.73	+1.1
5,322,440	+		BT4080	0.74	+1.4
5,322,446	+		BT4080	0.74	-0.1
5,322,534	-		BT4080	0.81	+0.1
5,322,609	-		BT4080	0.86	-2.2
5,322,636	+		BT4080	0.88	-1.0
5,322,636	+		BT4080	0.88	-0.5
5,322,637	-		BT4080	0.88	+0.2
5,322,637	-		BT4080	0.88	+1.1
5,322,645	-		BT4080	0.89	+0.8
5,322,746	-				-0.2
5,322,799	-				+0.0
5,322,843	-				-1.2
5,322,885	-				-0.0
5,322,921	+				+1.5
5,322,966	-				-0.5
5,322,967	+				-0.6
5,322,973	-				-0.0
5,322,995	+				-0.2
5,322,996	-				-0.9
5,322,996	-				+1.5
5,323,003	-				+0.1
5,323,006	-				+0.8
5,323,039	+				+0.5
5,323,120	-				-1.4
5,323,161	-		BT4081	0.11	-0.7
5,323,173	+		BT4081	0.11	+0.7
5,323,248	+		BT4081	0.13	-1.3
5,323,250	+		BT4081	0.13	-1.1
5,323,255	-		BT4081	0.14	-1.1
5,323,262	+		BT4081	0.14	+0.0
5,323,263	-		BT4081	0.14	-1.0
5,323,363	-		BT4081	0.17	+0.2
5,323,366	-		BT4081	0.17	-0.5
5,323,366	-		BT4081	0.17	+0.3
5,323,499	+		BT4081	0.22	-0.4
5,323,503	-		BT4081	0.22	-2.1
5,323,503	-		BT4081	0.22	-1.3
5,323,561	-				+0.5
5,323,578	-		BT4081	0.24	-0.2
5,323,594	+		BT4081	0.25	+0.5
5,323,595	-		BT4081	0.25	-0.1
5,323,660	-		BT4081	0.27	+0.7
5,323,664	-		BT4081	0.27	+0.5
5,323,700	+		BT4081	0.28	-1.2
5,323,774	+		BT4081	0.30	+0.2
5,323,775	-		BT4081	0.30	-0.5
5,323,775	-		BT4081	0.30	-1.4
5,323,779	-		BT4081	0.31	+0.2