Strain Fitness in Bacteroides thetaiotaomicron VPI-5482 around BT3383

Experiment: BHIS with Fusidic 0.004 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	BHIS with Fusidic 0.004 mg/ml
4,360,522	-		BT3382	0.47	-1.4
4,360,553	-		BT3382	0.49	-0.3
4,360,556	+		BT3382	0.49	-0.2
4,360,557	-		BT3382	0.49	-1.6
4,360,557	-		BT3382	0.49	+0.2
4,360,562	-		BT3382	0.49	+0.7
4,360,562	-		BT3382	0.49	-1.0
4,360,565	-		BT3382	0.50	-0.6
4,360,565	-		BT3382	0.50	-0.6
4,360,576	+		BT3382	0.50	-0.3
4,360,576	+		BT3382	0.50	-1.7
4,360,576	+		BT3382	0.50	-0.1
4,360,580	+		BT3382	0.50	-0.2
4,360,590	+		BT3382	0.51	-0.4
4,360,597	+		BT3382	0.51	-0.7
4,360,610	+		BT3382	0.52	+0.0
4,360,610	+		BT3382	0.52	-0.3
4,360,610	+		BT3382	0.52	+1.0
4,360,674	+		BT3382	0.56	-1.5
4,360,680	+		BT3382	0.56	+0.7
4,360,681	-		BT3382	0.56	+0.8
4,360,714	+		BT3382	0.58	+0.9
4,360,805	-		BT3382	0.63	-0.4
4,360,844	-		BT3382	0.66	-2.5
4,360,844	-		BT3382	0.66	-0.4
4,360,875	-		BT3382	0.67	-0.7
4,360,891	+		BT3382	0.68	+1.5
4,360,891	+		BT3382	0.68	-0.3
4,360,892	-		BT3382	0.68	+1.3
4,360,892	-		BT3382	0.68	+0.7
4,360,892	-		BT3382	0.68	+0.0
4,360,948	-		BT3382	0.71	-2.6
4,360,948	-		BT3382	0.71	+0.2
4,361,017	+		BT3382	0.75	-0.1
4,361,017	+		BT3382	0.75	+0.7
4,361,018	-		BT3382	0.75	+1.2
4,361,019	+		BT3382	0.76	-0.5
4,361,019	+		BT3382	0.76	+1.2
4,361,019	+		BT3382	0.76	-1.6
4,361,020	-		BT3382	0.76	-1.3
4,361,020	-		BT3382	0.76	+0.7
4,361,029	+		BT3382	0.76	-0.4
4,361,029	+		BT3382	0.76	-0.8
4,361,029	+		BT3382	0.76	+1.7
4,361,030	-		BT3382	0.76	-1.1
4,361,041	+		BT3382	0.77	+1.1
4,361,102	+		BT3382	0.80	+0.2
4,361,102	+		BT3382	0.80	-0.7
4,361,102	+		BT3382	0.80	-0.3
4,361,103	-		BT3382	0.80	-0.5
4,361,105	-		BT3382	0.80	-0.3
4,361,105	-		BT3382	0.80	-0.5
4,361,116	+		BT3382	0.81	+2.2
4,361,139	+		BT3382	0.82	+0.7
4,361,139	+		BT3382	0.82	+0.7
4,361,139	+		BT3382	0.82	-0.6
4,361,140	-		BT3382	0.82	-1.4
4,361,144	-		BT3382	0.83	+0.3
4,361,203	+		BT3382	0.86	-0.2
4,361,209	+		BT3382	0.86	-3.0
4,361,214	-		BT3382	0.87	-2.2
4,361,231	-		BT3382	0.88	-0.5
4,361,240	-		BT3382	0.88	+0.9
4,361,242	+		BT3382	0.88	-1.3
4,361,243	-		BT3382	0.88	+1.1
4,361,255	+		BT3382	0.89	+0.7
4,361,278	+				-0.1
4,361,326	+				+0.6
4,361,332	-				+0.7
4,361,404	+				-1.8
4,361,404	+				+0.1
4,361,405	-				+1.3
4,361,426	-				+1.3
4,361,466	-				+0.2
4,361,479	-				+0.8
4,361,539	-		BT3383	0.17	-1.0
4,361,540	+		BT3383	0.17	-0.1
4,361,540	+		BT3383	0.17	-0.1
4,361,541	-		BT3383	0.18	+1.4
4,361,549	+		BT3383	0.19	+2.1
4,361,640	+		BT3383	0.41	-1.5
4,361,640	+		BT3383	0.41	-1.7
4,361,676	-		BT3383	0.49	-0.2
4,361,684	-		BT3383	0.51	+0.7
4,361,693	+		BT3383	0.53	+2.7
4,361,693	+		BT3383	0.53	+1.2
4,361,805	-		BT3383	0.80	-1.4
4,361,839	+		BT3383	0.88	-0.3
4,361,839	+		BT3383	0.88	+1.0
4,361,858	+				+0.7
4,361,873	+				-0.5
4,361,947	+				+1.2
4,361,950	-				-0.4
4,361,953	+				-1.0
4,361,954	-				+0.1
4,361,954	-				-1.6
4,361,954	-				-1.1
4,362,028	+				-0.5
4,362,057	+				+0.1
4,362,084	+				-1.7
4,362,112	-				-0.5
4,362,117	-				+0.2
4,362,117	-				-0.3
4,362,117	-				-0.6
4,362,122	+				+1.7
4,362,259	-		BT3384	0.23	-0.6
4,362,259	-		BT3384	0.23	+0.2
4,362,294	-		BT3384	0.28	+0.5
4,362,350	+		BT3384	0.37	+0.3
4,362,372	+		BT3384	0.41	+0.2
4,362,376	+		BT3384	0.42	-2.1
4,362,376	+		BT3384	0.42	-1.4
4,362,376	+		BT3384	0.42	-1.0
4,362,376	+		BT3384	0.42	-0.7
4,362,376	+		BT3384	0.42	-0.3
4,362,376	+		BT3384	0.42	-2.2
4,362,377	-		BT3384	0.42	+0.4
4,362,461	-		BT3384	0.56	+0.2
4,362,479	-		BT3384	0.58	-0.1
4,362,515	-		BT3384	0.64	-1.1
4,362,566	-		BT3384	0.73	-1.2
4,362,597	+		BT3384	0.78	-1.6
4,362,708	+				-0.6
4,362,709	-				+0.2
4,362,735	+				-1.7
4,362,746	+				-1.4
4,362,747	-				+3.6
4,362,757	+				+0.2
4,362,760	-				-1.2
4,362,760	-				-1.6
4,362,760	-				-0.3
4,362,762	-				-1.2
4,362,762	-				-0.8
4,362,774	-				-0.0
4,362,813	+				+1.1
4,362,869	+				+1.3
4,362,869	+				-0.9
4,362,869	+				-0.0
4,362,877	+				+0.6
4,362,878	-				+1.7
4,362,878	-				-2.2