Strain Fitness in Bacteroides thetaiotaomicron VPI-5482 around BT3382

Experiment: BHIS with Fusidic 0.004 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	BHIS with Fusidic 0.004 mg/ml
4,358,735	-		BT3381	0.46	-2.0
4,358,743	-		BT3381	0.46	+0.7
4,358,796	-		BT3381	0.50	-1.6
4,358,797	+		BT3381	0.50	-2.2
4,358,797	+		BT3381	0.50	+0.4
4,358,797	+		BT3381	0.50	-1.3
4,358,798	-		BT3381	0.50	+0.7
4,358,798	-		BT3381	0.50	-1.7
4,358,807	-		BT3381	0.50	-0.6
4,358,807	-		BT3381	0.50	+0.2
4,358,810	-		BT3381	0.50	-0.1
4,358,815	+		BT3381	0.51	+1.7
4,358,837	+		BT3381	0.52	+3.1
4,358,870	+		BT3381	0.54	+1.5
4,358,871	-		BT3381	0.54	-0.7
4,358,871	-		BT3381	0.54	+0.7
4,358,875	+		BT3381	0.54	-2.5
4,358,876	-		BT3381	0.54	+0.5
4,358,901	+		BT3381	0.56	-0.2
4,358,901	+		BT3381	0.56	-0.0
4,358,902	-		BT3381	0.56	+0.9
4,358,921	-		BT3381	0.57	-0.6
4,358,929	-		BT3381	0.57	-2.0
4,358,938	+		BT3381	0.58	+1.2
4,358,941	-		BT3381	0.58	-2.4
4,358,953	+		BT3381	0.59	-0.5
4,358,954	-		BT3381	0.59	+0.7
4,358,954	-		BT3381	0.59	+1.3
4,358,972	-		BT3381	0.60	+1.3
4,358,990	+		BT3381	0.61	-2.6
4,359,007	+		BT3381	0.62	+1.6
4,359,008	-		BT3381	0.62	-0.8
4,359,010	-		BT3381	0.62	+0.2
4,359,010	-		BT3381	0.62	-0.1
4,359,016	+		BT3381	0.62	-1.7
4,359,084	+		BT3381	0.66	+0.7
4,359,109	+		BT3381	0.68	-1.6
4,359,109	+		BT3381	0.68	-0.3
4,359,110	-		BT3381	0.68	+0.3
4,359,110	-		BT3381	0.68	+0.7
4,359,154	-		BT3381	0.70	-2.4
4,359,177	+		BT3381	0.72	+0.0
4,359,177	+		BT3381	0.72	+0.9
4,359,178	-		BT3381	0.72	-0.1
4,359,191	+		BT3381	0.72	-1.2
4,359,320	+		BT3381	0.80	-0.3
4,359,335	-		BT3381	0.81	+0.0
4,359,413	-		BT3381	0.85	+0.3
4,359,465	+		BT3381	0.88	-0.3
4,359,465	+		BT3381	0.88	-0.3
4,359,466	-		BT3381	0.88	-1.3
4,359,466	-		BT3381	0.88	-1.0
4,359,476	-		BT3381	0.89	+1.2
4,359,525	-				-0.6
4,359,525	-				-1.3
4,359,606	-				-0.8
4,359,653	-				-2.0
4,359,768	+				-0.6
4,359,803	-				-0.9
4,359,839	-				-1.0
4,359,839	-				-1.2
4,359,872	+				-0.5
4,359,873	-		BT3382	0.10	-1.5
4,359,874	+		BT3382	0.10	-1.3
4,359,895	+		BT3382	0.11	-0.3
4,359,896	-		BT3382	0.11	-1.1
4,359,896	-		BT3382	0.11	-1.6
4,359,896	-		BT3382	0.11	+0.9
4,359,906	+		BT3382	0.12	+1.7
4,359,912	+		BT3382	0.12	+0.6
4,359,931	+		BT3382	0.13	-1.4
4,359,932	-		BT3382	0.13	+0.2
4,359,932	-		BT3382	0.13	+2.3
4,359,938	-		BT3382	0.14	-1.7
4,359,952	+		BT3382	0.15	+0.1
4,359,952	+		BT3382	0.15	-1.8
4,359,953	-		BT3382	0.15	-0.6
4,360,009	+		BT3382	0.18	+0.1
4,360,010	-		BT3382	0.18	+1.7
4,360,010	-		BT3382	0.18	+4.6
4,360,102	+		BT3382	0.23	-0.6
4,360,103	-		BT3382	0.23	+0.1
4,360,103	-		BT3382	0.23	-0.2
4,360,169	+		BT3382	0.27	-0.6
4,360,237	+		BT3382	0.31	+0.7
4,360,238	-		BT3382	0.31	+1.5
4,360,238	-		BT3382	0.31	-1.6
4,360,246	-		BT3382	0.31	-1.5
4,360,260	+		BT3382	0.32	-1.3
4,360,260	+		BT3382	0.32	-0.1
4,360,261	-		BT3382	0.32	+0.3
4,360,266	+		BT3382	0.32	-0.4
4,360,267	-		BT3382	0.33	+0.6
4,360,270	+		BT3382	0.33	-0.6
4,360,270	+		BT3382	0.33	-1.3
4,360,271	-		BT3382	0.33	-1.1
4,360,271	-		BT3382	0.33	+0.9
4,360,337	+		BT3382	0.37	-1.8
4,360,351	+		BT3382	0.37	+0.9
4,360,352	-		BT3382	0.37	-0.2
4,360,352	-		BT3382	0.37	-1.6
4,360,359	-		BT3382	0.38	-1.8
4,360,366	+		BT3382	0.38	+1.7
4,360,367	-		BT3382	0.38	+1.2
4,360,386	+		BT3382	0.39	-0.8
4,360,401	+		BT3382	0.40	-1.6
4,360,411	+		BT3382	0.41	-1.1
4,360,417	+		BT3382	0.41	-1.0
4,360,429	+		BT3382	0.42	+1.2
4,360,429	+		BT3382	0.42	-0.4
4,360,433	+		BT3382	0.42	+0.7
4,360,522	-		BT3382	0.47	-1.4
4,360,553	-		BT3382	0.49	-0.3
4,360,556	+		BT3382	0.49	-0.2
4,360,557	-		BT3382	0.49	-1.6
4,360,557	-		BT3382	0.49	+0.2
4,360,562	-		BT3382	0.49	+0.7
4,360,562	-		BT3382	0.49	-1.0
4,360,565	-		BT3382	0.50	-0.6
4,360,565	-		BT3382	0.50	-0.6
4,360,576	+		BT3382	0.50	-0.3
4,360,576	+		BT3382	0.50	-1.7
4,360,576	+		BT3382	0.50	-0.1
4,360,580	+		BT3382	0.50	-0.2
4,360,590	+		BT3382	0.51	-0.4
4,360,597	+		BT3382	0.51	-0.7
4,360,610	+		BT3382	0.52	+0.0
4,360,610	+		BT3382	0.52	-0.3
4,360,610	+		BT3382	0.52	+1.0
4,360,674	+		BT3382	0.56	-1.5
4,360,680	+		BT3382	0.56	+0.7
4,360,681	-		BT3382	0.56	+0.8
4,360,714	+		BT3382	0.58	+0.9
4,360,805	-		BT3382	0.63	-0.4
4,360,844	-		BT3382	0.66	-2.5
4,360,844	-		BT3382	0.66	-0.4
4,360,875	-		BT3382	0.67	-0.7
4,360,891	+		BT3382	0.68	+1.5
4,360,891	+		BT3382	0.68	-0.3
4,360,892	-		BT3382	0.68	+1.3
4,360,892	-		BT3382	0.68	+0.7
4,360,892	-		BT3382	0.68	+0.0
4,360,948	-		BT3382	0.71	-2.6
4,360,948	-		BT3382	0.71	+0.2
4,361,017	+		BT3382	0.75	-0.1
4,361,017	+		BT3382	0.75	+0.7
4,361,018	-		BT3382	0.75	+1.2
4,361,019	+		BT3382	0.76	-0.5
4,361,019	+		BT3382	0.76	+1.2
4,361,019	+		BT3382	0.76	-1.6
4,361,020	-		BT3382	0.76	-1.3
4,361,020	-		BT3382	0.76	+0.7
4,361,029	+		BT3382	0.76	-0.4
4,361,029	+		BT3382	0.76	-0.8
4,361,029	+		BT3382	0.76	+1.7
4,361,030	-		BT3382	0.76	-1.1
4,361,041	+		BT3382	0.77	+1.1
4,361,102	+		BT3382	0.80	+0.2
4,361,102	+		BT3382	0.80	-0.7
4,361,102	+		BT3382	0.80	-0.3
4,361,103	-		BT3382	0.80	-0.5
4,361,105	-		BT3382	0.80	-0.3
4,361,105	-		BT3382	0.80	-0.5
4,361,116	+		BT3382	0.81	+2.2
4,361,139	+		BT3382	0.82	+0.7
4,361,139	+		BT3382	0.82	+0.7
4,361,139	+		BT3382	0.82	-0.6
4,361,140	-		BT3382	0.82	-1.4
4,361,144	-		BT3382	0.83	+0.3
4,361,203	+		BT3382	0.86	-0.2
4,361,209	+		BT3382	0.86	-3.0
4,361,214	-		BT3382	0.87	-2.2
4,361,231	-		BT3382	0.88	-0.5
4,361,240	-		BT3382	0.88	+0.9
4,361,242	+		BT3382	0.88	-1.3
4,361,243	-		BT3382	0.88	+1.1
4,361,255	+		BT3382	0.89	+0.7
4,361,278	+				-0.1
4,361,326	+				+0.6
4,361,332	-				+0.7
4,361,404	+				-1.8
4,361,404	+				+0.1
4,361,405	-				+1.3
4,361,426	-				+1.3
4,361,466	-				+0.2
4,361,479	-				+0.8
4,361,539	-		BT3383	0.17	-1.0
4,361,540	+		BT3383	0.17	-0.1
4,361,540	+		BT3383	0.17	-0.1
4,361,541	-		BT3383	0.18	+1.4
4,361,549	+		BT3383	0.19	+2.1
4,361,640	+		BT3383	0.41	-1.5
4,361,640	+		BT3383	0.41	-1.7
4,361,676	-		BT3383	0.49	-0.2
4,361,684	-		BT3383	0.51	+0.7
4,361,693	+		BT3383	0.53	+2.7
4,361,693	+		BT3383	0.53	+1.2
4,361,805	-		BT3383	0.80	-1.4
4,361,839	+		BT3383	0.88	-0.3
4,361,839	+		BT3383	0.88	+1.0
4,361,858	+				+0.7
4,361,873	+				-0.5
4,361,947	+				+1.2
4,361,950	-				-0.4
4,361,953	+				-1.0
4,361,954	-				+0.1
4,361,954	-				-1.6
4,361,954	-				-1.1
4,362,028	+				-0.5
4,362,057	+				+0.1
4,362,084	+				-1.7
4,362,112	-				-0.5
4,362,117	-				+0.2
4,362,117	-				-0.3
4,362,117	-				-0.6
4,362,122	+				+1.7
4,362,259	-		BT3384	0.23	-0.6
4,362,259	-		BT3384	0.23	+0.2
4,362,294	-		BT3384	0.28	+0.5
4,362,350	+		BT3384	0.37	+0.3
4,362,372	+		BT3384	0.41	+0.2
4,362,376	+		BT3384	0.42	-2.1
4,362,376	+		BT3384	0.42	-1.4
4,362,376	+		BT3384	0.42	-1.0
4,362,376	+		BT3384	0.42	-0.7
4,362,376	+		BT3384	0.42	-0.3
4,362,376	+		BT3384	0.42	-2.2
4,362,377	-		BT3384	0.42	+0.4